DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr1H and tcea1

DIOPT Version :10

Sequence 1:NP_524439.1 Gene:Polr1H / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_956288.1 Gene:tcea1 / 336105 ZFINID:ZDB-GENE-030131-8049 Length:309 Species:Danio rerio


Alignment Length:112 Identity:26/112 - (23%)
Similarity:34/112 - (30%) Gaps:45/112 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESD--------------AD 73
            ::.||:|.|                       ..|.::...|..|..||              .|
Zfish   214 LRRNVLCGN-----------------------VSPDRIAKMTAEEMASDELKEMRKNLTKEAIRD 255

  Fly    74 GPVVER--------KCPKCNHDKMSYATLQLRSADEGQTVFFTCLKC 112
            ..|...        .|.||...|.:|..:|.|||||..|.|..|.:|
Zfish   256 HQVATSGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMTTFVFCNEC 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr1HNP_524439.1 RPB9 10..115 CDD:441202 26/112 (23%)
Zn-ribbon_RPA12 73..119 CDD:259792 17/48 (35%)
tcea1NP_956288.1 TFSII 7..309 CDD:273592 26/112 (23%)

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