Protein Alignment Polr1H and Tcea3

DIOPT Version :10

• Sequence 1: NP_524439.1
• Gene: Polr1H / 42563
• FlyBaseID: FBgn0038903
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_001015008.1
• Gene: Tcea3 / 298559
• RGDID: 1311369
• Length: 348
• Species: Rattus norvegicus
• Alignment Length: 131
• Identity: 29/131 - (22%)
• Similarity: 38/131 - (29%)
• Gaps: 49/131 - (37%)

  Fly    31 NCKK---EFQPDVYSGEKSEFTIHFN------------------------TYDPSKVFNRTKRES 68
            ||.|   |.:..:|...||....:.|                        |..|..:...|..|.
  Rat   211 NCDKLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGTISPELIAKMTAEEM 275

  Fly    69 ESD---------------------ADGPVVE-RKCPKCNHDKMSYATLQLRSADEGQTVFFTCLK 111
            .||                     ..|...: .:|.||.....:|..:|.|||||..|.|..|.:
  Rat   276 ASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNE 340

  Fly   112 C 112
            |
  Rat   341 C 341

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1H	NP_524439.1	RPB9	10..115	CDD:441202	29/131 (22%)
		Zn-ribbon_RPA12	73..119	CDD:259792	15/41 (37%)
Tcea3	NP_001015008.1	TFSII	5..348	CDD:273592	29/131 (22%)