DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpI12 and Tcea3

DIOPT Version :9

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:XP_006538773.1 Gene:Tcea3 / 21401 MGIID:1196908 Length:385 Species:Mus musculus


Alignment Length:33 Identity:14/33 - (42%)
Similarity:18/33 - (54%) Gaps:0/33 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KCPKCNHDKMSYATLQLRSADEGQTVFFTCLKC 112
            :|.||.....:|..:|.|||||..|.|..|.:|
Mouse   346 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 14/33 (42%)
Zn-ribbon_RPA12 73..119 CDD:259792 14/33 (42%)
Tcea3XP_006538773.1 TFSII 5..385 CDD:273592 14/33 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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