DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI12 and rpb-9

DIOPT Version :9

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_505062.1 Gene:rpb-9 / 179178 WormBaseID:WBGene00022400 Length:167 Species:Caenorhabditis elegans


Alignment Length:135 Identity:33/135 - (24%)
Similarity:52/135 - (38%) Gaps:42/135 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PG-----FCPSCGSIL-PELQVKGNVICYNCKK------EFQPDVYSG----EKSEFT------I 50
            ||     |||.|.::| |....:..|:.|:|:.      ...|.:|..    |..|.|      |
 Worm    51 PGFVGIKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGDII 115

  Fly    51 HFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLK--CK 113
            |    ||      |..::|        |.:||.|...|..:...|.:.|:|...:::.|..  |:
 Worm   116 H----DP------TLPKTE--------EHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQ 162

  Fly   114 FKESE 118
            .:.:|
 Worm   163 HRWTE 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 31/128 (24%)
Zn-ribbon_RPA12 73..119 CDD:259792 11/48 (23%)
rpb-9NP_505062.1 RPB9 56..167 CDD:224510 30/128 (23%)
Zn-ribbon_RPB9 116..166 CDD:259793 15/67 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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