DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpI12 and TCEANC

DIOPT Version :9

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_689847.2 Gene:TCEANC / 170082 HGNCID:28277 Length:381 Species:Homo sapiens


Alignment Length:93 Identity:23/93 - (24%)
Similarity:32/93 - (34%) Gaps:33/93 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 HFNTYDPSKVFNRTKRESE-SDADGPVVERKCPKCNHDKMSYATLQLRSADEGQT---------- 104
            ||...||.   :..||.|| .|...| :..||     .::.||.|...|.|:.:.          
Human   180 HFGDGDPE---STGKRSSELLDPTTP-MRTKC-----IELLYAALTSSSTDQPKADLWQNFAREI 235

  Fly   105 ---VFF----------TCLKCKFKESEN 119
               ||.          ||::.|....:|
Human   236 EEHVFTLYSKNIKKYKTCIRSKVANLKN 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 22/91 (24%)
Zn-ribbon_RPA12 73..119 CDD:259792 13/68 (19%)
TCEANCNP_689847.2 TFSII 36..373 CDD:273592 23/93 (25%)
Med26 59..108 CDD:285873
TFIIS_M 202..308 CDD:284835 14/68 (21%)
Zn-ribbon 319..373 CDD:295390
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.