DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42335 and Lta4h

DIOPT Version :10

Sequence 1:NP_732655.3 Gene:CG42335 / 42558 FlyBaseID:FBgn0259237 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001025202.1 Gene:Lta4h / 299732 RGDID:1311333 Length:611 Species:Rattus norvegicus


Alignment Length:508 Identity:108/508 - (21%)
Similarity:199/508 - (39%) Gaps:113/508 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CSLL----ICVTNAADYRLEGSVVPSHYNLTIGV------LRNSVEPTIFDGEVSITLRVVGT-- 65
            |||.    :|.|             .|.:|...|      |..:...|:...|.::....:.|  
  Rat     8 CSLASPASVCRT-------------QHLHLRCSVDFARRALTGTAALTVQSQEDNLRSLTLDTKD 59

  Fly    66 LEVQQIILHADTLDITECWLLDAAGAQVEAIDISRLIYEAATQQVRVPLTEAAQPGKNYTLGFKY 130
            |.:::::::...:..|   |.::.|.:...::||..|..:..|:|.:.::....|          
  Rat    60 LTIEKVVINGQEVKYT---LGESQGYKGSPMEISLPIALSKNQEVVIEISFETSP---------- 111

  Fly   131 TGHIRTDMAGFFSASYVERDTNVTRWLA------------LTQMQRINARLVLPCFDEPALKAQF 183
                               .::..:||.            .:|.|.|:.|.:|||.|.|::|..:
  Rat   112 -------------------KSSALQWLTPEQTSGKQHPYLFSQCQAIHCRAILPCQDTPSVKLTY 157

  Fly   184 QLQIVRPNGYQSIANTKLKETKALSQD---RFVDHFKETPVMSTYLLAFMVANYSARGNESEFAV 245
            ..::..|....::.:. :::.:|...:   |.:..|.:...:..||:|.:|....:|.......|
  Rat   158 TAEVSVPKELVALMSA-IRDGEAPDPEDPSRKIYRFNQRVPIPCYLIALVVGALESRQIGPRTLV 221

  Fly   246 LTRPEFYDNTEFSYHVGQQVVSAYGELFQSPYAELGNDVLQYASSPRFPHNGMENWGLIIYSDDV 310
            .:..|..:.:.:.:...:.::....:| ..||.....|:|  ...|.||:.||||..|...:..:
  Rat   222 WSEKEQVEKSAYEFSETESMLKIAEDL-GGPYVWGQYDLL--VLPPSFPYGGMENPCLTFVTPTL 283

  Fly   311 LIQEPGYSDDWSDKEFAIRIIAHETSHMWFGDSVTFSWWSYFWLNEAFARYYEYFMAHQLYPDYH 375
            |..:...|:          :||||.||.|.|:.||...|.:|||||....|.|..:..:|:    
  Rat   284 LAGDKSLSN----------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLF---- 334

  Fly   376 LDEQFVVRQMQLIFG-TDAQN------GTQPMTSPESEIQ-TPSQIAYKFSGIAYAKGACIVRMW 432
             .|:|  |....:.| .:.||      .:.|.|....::: ....:||  |.|.|.||..::...
  Rat   335 -GEKF--RHFHALGGWGELQNTIKTFGESHPFTKLVVDLKDVDPDVAY--SSIPYEKGFALLFYL 394

  Fly   433 RNLMGA-ENFDTAIRSYLQQ--YHLTNTVPYNLFYHLFEHWPKNQDVDLVDFL 482
            ..|:|. |.|...:::|:::  |....|..:..|  |:.|:.     |.||.|
  Rat   395 EQLLGGPEVFLGFLKAYVEKFSYQSVTTDDWKSF--LYAHFK-----DKVDLL 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42335NP_732655.3 M1_APN-Q_like 34..487 CDD:341064 103/483 (21%)
ERAP1_C 566..878 CDD:463368
Lta4hNP_001025202.1 leuko_A4_hydro 6..608 CDD:274120 108/508 (21%)
Blue background indicates that the domain is not in the aligned region.

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