DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-alpha180 and pold1

DIOPT Version :9

Sequence 1:NP_536736.2 Gene:DNApol-alpha180 / 42553 FlyBaseID:FBgn0259113 Length:1488 Species:Drosophila melanogaster
Sequence 2:NP_001039204.1 Gene:pold1 / 734063 XenbaseID:XB-GENE-1002131 Length:1109 Species:Xenopus tropicalis


Alignment Length:1228 Identity:290/1228 - (23%)
Similarity:496/1228 - (40%) Gaps:307/1228 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 DDDENQFDVE-------KTQQTEKVSQTKTAAEKTSQSKVAEKSAPKK-----ETTGSPKESESE 324
            ||..:||:.|       :.:...::|:.:.:|:.....|:...:.|.|     .:...|||    
 Frog    27 DDAPSQFEEELAFMDEVEAEMAMELSEGQLSADILPVGKLISDNIPPKWLRPPVSLTDPKE---- 87

  Fly   325 DISRLLNNWESICQMDDDFEKSVLTTEQDSTISSDQQLRFWYWEAYEDPVKMPGEVFLFGRTADG 389
                     :::|     |::..|.....|.:|.       ...|.:.||.:   :.:||.|.:|
 Frog    88 ---------QTLC-----FQQVELDHYVGSHVSG-------MLGATQGPVPI---IRMFGITEEG 128

  Fly   390 KSVCLRVQNINRVLYLLPRQFLLDPISKEPT----KQKVTVADIYKEFDSEVANQLKLEFFRSRK 450
            .|||..:.......|:             |.    ||: .::|..||.:|.|...:     ||.|
 Frog   129 NSVCCHIHGFAPYFYV-------------PCHTGFKQE-DLSDFKKELNSAVIKDM-----RSNK 174

  Fly   451 VTKSFAHHAIGIEVPQSCDYLEVH-YDGKK---------PLPNLSADKKY---------NSIAHI 496
              .|.:...:.::|   |....:: |.|||         .||.|.|..|.         ....|.
 Frog   175 --DSISQAVLAVDV---CHKENMYGYHGKKIIPFMKITMALPRLIAPAKRLLEQGLRFGRHPTHC 234

  Fly   497 FGATTNALE---RFLLDRKIKGPCWLQVTG--------------FKVSPTPMSWCNTEVTLTEPK 544
            :.|....::   ||::|..|.|..|:::..              .|.:|:.:|....||.::.  
 Frog   235 YQAYEANIDFEIRFMVDNDIVGCNWIELPAGKYRLRKESQDEGPSKENPSKVSLAQIEVDISW-- 297

  Fly   545 NVELVQD--KGKPAPPPPLTLLSLNV----RTSMNPKTSRNEICMISMLTHNRFHIDRPAPQPAF 603
             .:|:..  :|......||.:||.::    |..:.|:..::.:..|:.:      :.|...:.||
 Frog   298 -ADLISHPAEGDWQKIAPLRVLSFDIECAGRKGVFPEPDKDPVIQIANM------VLRQGEKDAF 355

  Fly   604 NRHMCAL-TRPAVVSWPLDLNFEMAKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDC 667
            .|::..| |..::|              .:.|...|.|.|||..:....:.||.|:|..::..:.
 Frog   356 IRNVFTLGTCSSIV--------------GSQVLCFDREDALLKAWADFVRTIDPDIITGYNIQNF 406

  Fly   668 QLNVITDQIVALKIPQWSRMGRLR-----------LSQSFGKRLLEHFV----GRMVCDVKRSAE 717
            .:..:.::...||:|.:..:||:|           .|:..|:|  |:.|    ||:..|:.:...
 Frog   407 DMPYLINRAQTLKVPNFPFLGRIRSMKSVIRDSSFQSKQMGRR--ENKVINTEGRVQFDLLQVLL 469

  Fly   718 ECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYL-LR----L 777
            ...:.|||.|..:....|   :.::.:|....:.::....|...:.:::....::|| ||    |
 Frog   470 RDYKLRSYTLNAVSFHFL---QEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLMEKL 531

  Fly   778 MCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSKRSGAGDTDA 842
            ||.:|.|.:|    .:.|..::..|..|:..:....||....:::.::    ||.|..|..|   
 Frog   532 MCVINYMEMA----RVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVM----PVVKSEGGED--- 585

  Fly   843 TLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQ------ 901
                            |.|..|:||::|.|:..:..:||:||||||:..:|:|:||:.|      
 Frog   586 ----------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLQSGSIDK 634

  Fly   902 ----PVDADELPT---LPDSKTEPGILPLQLKRLVESRK----EVKKLMAAPDLSPELQMQYHIR 955
                |.|..:.||   ...:....|:||..|:.|:.:||    |:||     :..|..|.....|
 Frog   635 YGLSPEDFIKTPTGDCFVKASIRKGLLPEILENLLCARKRAKAELKK-----ETDPFKQKVLDGR 694

  Fly   956 QMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQ---------KMNYDVVYG 1011
            |:|||::|||:||..|....:.....::..||..||:::..|:|||:         |.:..|:||
 Frog   695 QLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLDNGYKADAKVIYG 759

  Fly  1012 DTDSLMINTNITDYDQVYKIGHNIKQSVNKLY-KQLELDIDGVFGCLLLLKKKKYAAIKLSKDSK 1075
            ||||:|....:....:..:||....:.|:..: ..::|:.:.|:...||:.||:||.:..|  |.
 Frog   760 DTDSVMCKLGVQTVVEAMEIGREAAEWVSSHFTPPIKLEFEKVYFPYLLINKKRYAGLYFS--SS 822

  Fly  1076 GNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAV-HAQLEKIKTQIAEGVVP 1139
            .|...:.:.||::.||||...|...:....|.::|.::   :.:.|| ||  :.:.:.:....:.
 Frog   823 ANTHDKMDCKGIETVRRDNCPLVANLINTCLQKILIDR---DPMGAVEHA--KDVISDLLCNRID 882

  Fly  1140 LPLFVITKQLTRTPQEYANSASLPHVQVALRM-NRERNRRYKKGDMVDYVICLDGTTNAAMQRAY 1203
            :...||||:||||..|||...:  ||::|.|| .|:.......||.|.|||     ..||...|.
 Frog   883 ISQLVITKELTRTADEYAGKQA--HVELAERMRKRDPGSAPNLGDRVPYVI-----IGAAKGVAA 940

  Fly  1204 HLDELKTSED------KKLQLDTNYYLGHQIHPVVTRMVEVLEGTD------------------- 1243
            ::    .|||      ..:.:||.|||..|:...:.|:.|.:.|..                   
 Frog   941 YM----KSEDPIYVLENNIPIDTQYYLEQQLAKPLLRIFEPILGESKAESILLKGEHTRCKTVLT 1001

  Fly  1244 ---------ASRIAECLGMDPTKFRQNAQRTQRENTEQSEGESLLKTTLQLYRLCEPFR---FQC 1296
                     |.:.:.|:|...|   .|.........:|.|.|.:.|...||..|.|.|.   .||
 Frog  1002 AKVGGLMAFAKKRSTCIGCKAT---LNHDGAVCNYCKQRESELIQKEISQLSGLEEKFSRLWTQC 1063

  Fly  1297 VTCKTEQLMASAYRPGPSNSHIAVLQQCAKSECQTAPIQYLASVRNQLQLSMRQYVQR 1354
            ..|:             .:.|..||  |...:|   ||.|           ||:.||:
 Frog  1064 QRCQ-------------GSLHEDVL--CTSRDC---PIFY-----------MRKKVQK 1092

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-alpha180NP_536736.2 DNA_pol_alpha_N 24..83 CDD:289058
pol2 52..1237 CDD:273159 259/1078 (24%)
DNA_polB_alpha_exo 567..789 CDD:99819 51/246 (21%)
POLBc_alpha 852..1254 CDD:99915 132/464 (28%)
zf-DNA_Pol 1286..1459 CDD:286132 18/72 (25%)
pold1NP_001039204.1 PTZ00166 76..1105 CDD:240301 280/1179 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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