DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E2f1 and e2f1

DIOPT Version :9

Sequence 1:NP_001262809.1 Gene:E2f1 / 42550 FlyBaseID:FBgn0011766 Length:821 Species:Drosophila melanogaster
Sequence 2:XP_012808274.2 Gene:e2f1 / 100493924 XenbaseID:XB-GENE-481741 Length:428 Species:Xenopus tropicalis


Alignment Length:640 Identity:142/640 - (22%)
Similarity:212/640 - (33%) Gaps:288/640 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 SAPQQLRHSHHQLRHD-----ADAELDEDVVERVAKPASHHPFSLSTPQQQLAASVASSSSSGDR 252
            :.||....|:...|.|     ...:||.:.|.|..:.|      |.||:.:....:.:..|.|:|
 Frog    59 TTPQGPSTSYTAQRPDLGRPPVKRKLDLETVSRYNQEA------LQTPRGKGKRPLKAVKSPGER 117

  Fly   253 NRADTSLGILTKKFVDLLQESPDGVVDLNEASNRLHVQKRRIYDITNVLEGINILEKKSKNNIQW 317
            :|.||||.:.||:|::||.:|.|||||||.|:..|:||||||||||||||||:::.|||||:|||
 Frog   118 SRYDTSLHLTTKRFLELLSQSSDGVVDLNWAAQVLNVQKRRIYDITNVLEGIHLITKKSKNHIQW 182

  Fly   318 RCGQSMVSQERSRHIEA--DSLRLEQQENELNKAIDLMRENLAEISQEVENSGGMAYVTQNDLLN 380
             .|.:..::..||:..|  |..:||.||.:|:|.|.:....|....:|..::.|  |||..||.:
 Frog   183 -LGYTSYAEYNSRYQSALKDCQKLEDQEKQLDKLIHMANTQLKLFKEEECHNFG--YVTCQDLRS 244

  Fly   381 VDLFKDQIVIVIKAPPEAKLVRSATALKFQPLPFNLNLPNTKLPREIYVKAENSGEINVFLCHD- 444
            :....:::::||:.||:..:..|..|..||     ::|.:|:.|            |:||||.| 
 Frog   245 IADPSERMLMVIRYPPDTDMCVSDPAEAFQ-----MSLKSTQAP------------IDVFLCPDD 292

  Fly   445 ----TSPENSPIAPGAGYVGAPGAGCVRTATSTRLHPLTNQRLNDPLFNNIDAMSTKGLFQTPYR 505
                .||..||                 |.||                                 
 Frog   293 SSGVCSPVTSP-----------------TKTS--------------------------------- 307

  Fly   506 SARNLSKSIEEAAKQSQPEYNNICDIAMGQHHNLNQQQQQQQQQLLQQPEEDDVDVELNQLVPTL 570
                          |::|.                                     .:||..|. 
 Frog   308 --------------QAEPS-------------------------------------SINQAEPL- 320

  Fly   571 TNPVVRTHQFQQHQQPSIQELFSSLTESSPPTPTKRRREAAAAAIAAGSSTTATTTLNSHNNRNH 635
                           ||:|.     .|.||                                   
 Frog   321 ---------------PSVQP-----KEESP----------------------------------- 330

  Fly   636 SNHSNHSNHSSSNNSKSQPPTIGYGSSQRRSDVPMYNCAMEGATTTSATADTTAATSRSAAASSL 700
                                          :.:||.:                            
 Frog   331 ------------------------------ASIPMLD---------------------------- 337

  Fly   701 QMQFAAVAESNNGSSSGGGGGGGGYGSIAGAGANADPHQPYSHDRNSLPPGVADCDANSNSSSVT 765
                                        .|.|..:|..:|:....|.:|     .|:..|...::
 Frog   338 ----------------------------IGLGLLSDMQEPFLPPENEIP-----LDSTLNCLPLS 369

  Fly   766 LQGLDALFNDIGSDYFSNDIAFVSINPPDDNDYPYALNANEGIDRLFDFGSDAYG 820
            ...|...:.|...|:..||  |:|::|....:|.:.|...||...||:|..|..|
 Frog   370 PSNLLLDYRDAMPDFLPND--FISLSPASSQEYSFGLQTCEGAAELFNFDCDFSG 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E2f1NP_001262809.1 E2F_TDP 256..318 CDD:280479 42/61 (69%)
E2F_DD 327..444 CDD:304549 35/118 (30%)
coiled coil 327..362 CDD:271137 12/36 (33%)
e2f1XP_012808274.2 E2F_TDP 121..184 CDD:396755 43/63 (68%)
E2F_DD 193..292 CDD:271137 35/117 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I6971
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 188 1.000 Inparanoid score I3783
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000356
OrthoInspector 1 1.000 - - otm49309
Panther 1 1.100 - - LDO PTHR12081
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X977
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.150

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