DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E2f1 and e2f8

DIOPT Version :10

Sequence 1:NP_001262809.1 Gene:E2f1 / 42550 FlyBaseID:FBgn0011766 Length:821 Species:Drosophila melanogaster
Sequence 2:XP_002942881.1 Gene:e2f8 / 100142691 XenbaseID:XB-GENE-1219148 Length:744 Species:Xenopus tropicalis


Alignment Length:665 Identity:142/665 - (21%)
Similarity:242/665 - (36%) Gaps:186/665 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 SAPQQLRHSHHQLRHDADAELDEDVVERVAKPASHHPFSLSTPQQQLAASVASSSS--------- 248
            |.|:||..:...|   .:.::....::...||...:.....||...|...::::|.         
 Frog    20 SPPKQLTSAASVL---GEIQIAAANLKTPTKPQERNNADPWTPTANLKMLISAASPEIRNREREI 81

  Fly   249 -----SGDR------NRADTSLGILTKKFVDLLQESPDGVVD----LNEASNRLHVQKRRIYDIT 298
                 |||.      :|.:.|||:|..||:......|:..|:    |:|.:..|.|::||||||.
 Frog    82 LEEQFSGDELEKTLPSRKEKSLGLLCHKFLARYPSYPNPAVNNSICLDEVAGELSVERRRIYDIV 146

  Fly   299 NVLEGINILEKKSKNNIQWRCGQSMVSQERSRHIEADSLRLEQQENELNKAIDLMRENLAEISQE 363
            ||||.::::.:.:||...|. |:..:|:      ..|:|:...:||...:.|.|:|:...|   |
 Frog   147 NVLESLHMVSRLAKNKYIWH-GRLNLSK------TFDALKKVGEENRYGEQIQLLRKREQE---E 201

  Fly   364 VENSGGMAYVTQNDL------------------LNVDLFKDQ---------IVIVIKAPPE---- 397
            .::.......||..|                  .:|:..|::         :::.:.:.|:    
 Frog   202 CDSQNSPNAETQKPLAKQPEVGFVELPGLEFRAASVNSRKEKSLRVMSQRFVMLFLVSDPQIVSL 266

  Fly   398 ---AKLV----------RSATALKFQPLPFNLN-LPNTKLPREIYVKAENSGEINVF------LC 442
               ||::          :|....|.:.|....| |.:..|.::::| .|..|....|      ||
 Frog   267 EVAAKILIGEDQLEDLDKSKFKTKIRRLYDIANVLTSLNLIKKVHV-TEEKGRKPAFQWTCPELC 330

  Fly   443 HDTSPEN--SPIA--PGAGYVGAPGAGCVRT------ATSTRLHPLTNQRLNDPLFNNIDAMSTK 497
            .| ..||  ||.|  |.|..:.:|...|.:.      .|.|| || :..:|...:.|  |.....
 Frog   331 TD-DQENRSSPAALTPVAIDLSSPKENCAKNLFASGGKTFTR-HP-SLIKLAKSIEN--DRRKIN 390

  Fly   498 GLFQTPYRSARNLSKSIEEAAKQSQPEYNNICDIAMGQHHNLNQQQQQQQQQ------------- 549
            ....:|.:|....|.:..:.|:.:.     ||          .||.||.:.|             
 Frog   391 SAPSSPIKSGDGSSSAASKMAQLAA-----IC----------KQQLQQSRDQTKVKLKVSACKAK 440

  Fly   550 -LLQQPEEDDVDVELNQLVPTLTNPVVRTHQFQQHQQPSI------QELFSSLTESSPPTPTKRR 607
             .::||...|    .|| .||....:...|.......|..      ||  .:|:..|||.     
 Frog   441 STVKQPGGSD----KNQ-TPTYCRAIPLLHPHPSAAPPYTVIVQPPQE--QTLSRQSPPA----- 493

  Fly   608 REAAAAAIAAGSSTTATTTLNSHNNRNHSNHSNHS-NHSSSNNSKSQPPTIGYGSSQRRSDVPMY 671
             .|.:..:|.|.:............|:..:.::|| :||:......:.|....|.:.:|    |.
 Frog   494 -LAHSVPLAQGYTNRTPPEAPLQGGRHEGDGTSHSEDHSAQERHPKRLPESDRGCTSKR----MK 553

  Fly   672 NCAMEGATTT-----------------SATADTTAATSRSAAASS-------LQMQFA-----AV 707
            :.|::..|.|                 ..:.:.|..:|.:...:|       |::.|:     ||
 Frog   554 SSAVDDVTETLYPSGYLIPIHLAPVAPEPSKENTGPSSENKLFTSPIPGVFPLKLMFSPGPVTAV 618

  Fly   708 AESNNGSSSGGGGGG 722
            ...:.|....|||.|
 Frog   619 PVMSRGGQHVGGGSG 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E2f1NP_001262809.1 E2F_TDP 256..318 CDD:460530 24/65 (37%)
E2F_DD 327..444 CDD:473951 29/167 (17%)
coiled coil 327..362 CDD:271137 8/34 (24%)
e2f8XP_002942881.1 E2F_TDP 99..167 CDD:460530 25/68 (37%)
E2F_TDP 241..324 CDD:460530 14/83 (17%)
PRK12323 <445..>523 CDD:481241 19/90 (21%)

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