DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and Hoxa5

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_077365.1 Gene:Hoxa5 / 79241 RGDID:620609 Length:381 Species:Rattus norvegicus


Alignment Length:512 Identity:112/512 - (21%)
Similarity:162/512 - (31%) Gaps:178/512 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 SSPAQQRKLLELNAVRHLA--RPEPLQHPHAALLQQHPHLLQNPQFLAAAQQHMHHHQHQHHQHP 213
            |||.::|        |.:|  ||...:||.    :.||    .|..|         |:.....|.
  Rat    10 SSPTERR--------RRVAGTRPGSARHPS----RLHP----TPPLL---------HEFTSRGHQ 49

  Fly   214 AHPHSHQHPHPHPHPHPH------------PHPSAVFH---LRAPSSSSTAPPSPATSPLSPPTS 263
            |...:.|..|......|:            |..|.:.|   ..|..:.:||....:|        
  Rat    50 AGFTTGQQKHVIRSRTPYLGAYVGGNRVHVPVISIIHHKLCKGAIDAQTTASHKSST-------- 106

  Fly   264 PAMHSDQQMSPPIAP------PQNPPHSSQPPQQQQVAAPSDMDLERIKLVAAVAARTTQASSTS 322
               |..:|||.....      |..|                |..|......::|:.:...::|..
  Rat   107 ---HIKKQMSSYFVNSFCGRYPNGP----------------DYQLHNYGDHSSVSEQFRDSASMH 152

  Fly   323 ALASASNSVSNASISISNSSSGS-PSGRDLSDYGFRIQLGGLAAAAAAAAATSRQIAAATYARSD 386
            : .......:...:|:..|.||. .||.....|         ||.|:||.|..|....||...|.
  Rat   153 S-GRYGYGYNGMDLSVGRSGSGHFGSGERARSY---------AAGASAAPAEPRYSQPATSTHSP 207

  Fly   387 TSEELN----VDGNDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAF 447
            ..:.|.    ......||:.|..:           |:.:|:.|:.::.||..||.....|...| 
  Rat   208 PPDPLPCSAVAPSPGSDSHHGGKN-----------SLGNSSGASANAGSTHISSREGVGTASAA- 260

  Fly   448 SVENILDPNKFTGNKLPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLN----------DM 502
                                         |.|..........|||...|....          .:
  Rat   261 -----------------------------EEDAPASSEQAGAQSEPSPAPPAQPQIYPWMRKLHI 296

  Fly   503 DQDDMCDDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKPRRARTAFTYEQLVSLENKFKTT 567
            ..|::                                 ||.:.:|||||:|..|.:.||.:|...
  Rat   297 SHDNI---------------------------------GGPEGKRARTAYTRYQTLELEKEFHFN 328

  Fly   568 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTIPPPGGGSFGP 624
            |||:...|:.:|.:|.|:|.|:||||||||.||||.|....::...    .||:|.|
  Rat   329 RYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAA----AGGAFRP 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 29/55 (53%)
Hoxa5NP_077365.1 Homeodomain 307..363 CDD:459649 29/55 (53%)

Return to query results.
Submit another query.