DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and Nkx6-1

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:429 Identity:117/429 - (27%)
Similarity:160/429 - (37%) Gaps:150/429 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 QQHPHLLQNPQFLAAAQQHMHHHQHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSS 247
            :|...||.:|...|.       |.....:.|.:|.::.       |.|...||:     :.||||
  Rat    11 RQSAFLLSSPPLAAL-------HSMAEMKTPLYPAAYP-------PLPTGPPSS-----SSSSSS 56

  Fly   248 TAPPSPATSPLSPPTSPAMHSDQQMSPPIAPPQNPPHSSQPPQQQQVAAPSDMD--LERIKLVAA 310
            ::.|||   ||      ..|:...:.||.|...:...|  ||||...|.|..::  |.|..:..|
  Rat    57 SSSPSP---PL------GAHNPGGLKPPAAGGLSSLGS--PPQQLSAATPHGINDILSRPSMPVA 110

  Fly   311 VAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAAATSR 375
                     |.:||.|||.|.|      |:|||.|.|....|           |||||||||.: 
  Rat   111 ---------SGAALPSASPSGS------SSSSSSSASATSAS-----------AAAAAAAAAAA- 148

  Fly   376 QIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDA 440
              |||                         |:|:.....|.|..:.|....|.....|.|:...|
  Rat   149 --AAA-------------------------SSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVA 186

  Fly   441 ATKRLAFSVENILDPNK---FTGNKLPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDM 502
            |..|....:..:  |.:   |....:.|.|      |   ||..:                    
  Rat   187 AVGRYPKPLAEL--PGRTPIFWPGVMQSPP------W---RDARL-------------------- 220

  Fly   503 DQDDMC--DDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKPRRARTAFTYEQLVSLENKFK 565
                .|  ..||.:.|.              |||.          :..|..|:.:|:.:||..|:
  Rat   221 ----ACTPHQGSILLDK--------------DGKR----------KHTRPTFSGQQIFALEKTFE 257

  Fly   566 TTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 604
            .|:||:..||..||.||.:||:|||:|||||||||:|::
  Rat   258 QTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKH 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 29/55 (53%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 42/138 (30%)
Repressor domain. /evidence=ECO:0000250 102..269 66/279 (24%)
Homeodomain 236..294 CDD:459649 30/67 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 0/2 (0%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365
Blue background indicates that the domain is not in the aligned region.

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