DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and hoxb6b

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_571613.1 Gene:hoxb6b / 58053 ZFINID:ZDB-GENE-000823-7 Length:224 Species:Danio rerio


Alignment Length:250 Identity:71/250 - (28%)
Similarity:99/250 - (39%) Gaps:58/250 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   404 SHSTPSVCPVDLTRSVNSSAAANP--SSASTSASSDRDAATKRLAFSVENILDPNKFTGN--KLP 464
            |:...|..||.|.....|.....|  ||..|.:.....:||    |...|:.| ..:|.:  :..
Zfish     3 SYFVNSTFPVSLPGGQESFLGQIPLYSSGYTDSLRHYPSAT----FGATNVQD-KVYTSSYYQQA 62

  Fly   465 SGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLND----MDQDDMCDDGSDIDD------PSS 519
            .|.||                    :|...||.|.:.    ...|..|..|| ::|      ...
Zfish    63 GGVFG--------------------RSGSTSACDYSTPNIYRSADRSCAIGS-LEDSLVLTQDQC 106

  Fly   520 ETDSKKGGSR---NGDGK------------SGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRY 569
            :||..:.|:.   :.:.|            :...|..||..||.|..:|..|.:.||.:|...||
Zfish   107 KTDCTEQGTERYFSTEDKPCTPVYPWMQRMNSCNGMPGSTGRRGRQTYTRFQTLELEKEFHFNRY 171

  Fly   570 LSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTI-PPPGGGSFG 623
            |:...|:.::.:|.|||.|:||||||||.||||:|..  |||..: ....||..|
Zfish   172 LTRRRRIEISHALCLTERQIKIWFQNRRMKWKKENKA--VNSAKVSDEEDGGKAG 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 27/55 (49%)
hoxb6bNP_571613.1 Antp-type hexapeptide 129..134 0/4 (0%)
Homeodomain 148..204 CDD:459649 27/55 (49%)

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