DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and HGTX

DIOPT Version :9

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster


Alignment Length:590 Identity:132/590 - (22%)
Similarity:209/590 - (35%) Gaps:182/590 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 SLTNHNANSNTRRSQSPPASVGSVSFSSPAQQRKLLELNAVRHLARPEPLQHPHAALLQQHPHLL 189
            |:|....:||.  |.:||.....|:....||..: |..|:..:||.|...   :.|..||||..|
  Fly     8 SITPAGGSSNP--SPTPPPPDAKVAAKQLAQSFQ-LSANSAFNLALPPAF---YRAPPQQHPECL 66

  Fly   190 Q-----------NP-----QFLAAAQQHMHHHQHQHHQHPAHPHSHQHPHPHPHP---------- 228
            .           ||     .|.||||........:||...|..:.....|.|...          
  Fly    67 DYGHEAPEMDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAADYQQQLAD 131

  Fly   229 -HPHPHPSAVF-------HLRAPSSSSTAP---------------PSPATSPLSPPTSPAMHSDQ 270
             |.....:||:       :..:.::::::|               .||:|:|  ||.|..:|||.
  Fly   132 YHSAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAHGGGLKDSDSPSTTP--PPASSRLHSDS 194

  Fly   271 QMSPPIA------------------------PPQNPPHSSQPPQQQQVAAPSDMDLERIKL---- 307
            ..||...                        |.|....:|.|||.|...:|.::..:|.|.    
  Fly   195 SPSPRYEHNSSPGVDSAKSYALSQRSSGAEDPCQTSESASPPPQGQNDYSPENLSSQRAKFQHHH 259

  Fly   308 -VAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAA 371
             |..:|......:......:.:|.:.:   .:..|..|.|..   :.:....::.|.....::|:
  Fly   260 GVNPLALHNANHAGNPGCHNNNNHMDH---KLPLSFLGPPLA---ALHSMTTEMKGQGVGGSSAS 318

  Fly   372 ATSRQIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASS 436
            |.     ..:|:.|..|..::..|     :.||.|:.|.    .|.:.||..|.||....|..|.
  Fly   319 AN-----GLSYSHSPNSHLISDRG-----SGGSSSSSST----TTTNTNSQGAPNPHGIDTILSK 369

  Fly   437 DRDAATKRLA---------FSVE-----------------------NILDPNKFTGNKLPSGPFG 469
            .....:..|:         ||:.                       :|:|........| .|...
  Fly   370 PPPVTSAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGL-QGLVA 433

  Fly   470 HPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGK 534
            :|..|        :|||.:..|.::|.               |....||::.|.||         
  Fly   434 NPIAW--------RERLSNTMSANLSQ---------------SHQHHPSNDKDGKK--------- 466

  Fly   535 SGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 599
                       :..|..|:.:|:.:||..|:.|:||:..||..||.:|.::|:|||:||||||||
  Fly   467 -----------KHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTK 520

  Fly   600 WKKQN 604
            |:|::
  Fly   521 WRKRH 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeobox 549..601 CDD:278475 26/51 (51%)
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 47/230 (20%)
Homeobox 469..523 CDD:395001 27/53 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442254
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24340
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.950

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