DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and Tlx3

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_001414519.1 Gene:Tlx3 / 497881 RGDID:1564190 Length:291 Species:Rattus norvegicus


Alignment Length:313 Identity:78/313 - (24%)
Similarity:109/313 - (34%) Gaps:123/313 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 ALASASNSVSNASIS-----ISNS----SSGSPSGRDLSDYGFRIQLGGLAAAAAAAAATSRQIA 378
            |.|||.....:..||     |.||    |:.:|.|.|.:.|     |||.......||..|   .
  Rat     3 APASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASY-----LGGPPGGRPGAAYPS---L 59

  Fly   379 AATYARSDTSEELNVDGNDEDSNDGSHSTP-SVCPVDLTR-------------SVNSSAAANPSS 429
            .|::|        .:....||:  ||:|.. |:.|..:.|             .:.|:..|.||.
  Rat    60 PASFA--------GLGAPFEDA--GSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSV 114

  Fly   430 ASTSA---------SSDRDAATKRLAFSVENILDPNKFTGNKLPSGPFGHPRQWSYERDEEMQER 485
            .:.|:         .|.|.....|  |:....|.|  ||..:    ..|||.|            
  Rat   115 PTVSSLGGLNFPWMESSRRFVKDR--FTAAAALTP--FTVTR----RIGHPYQ------------ 159

  Fly   486 LDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKPRRART 550
                                             :.|..|:                    ::.||
  Rat   160 ---------------------------------NRTPPKR--------------------KKPRT 171

  Fly   551 AFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 603
            :|:..|:..||.:|...:||:..||..||.||.:|:.|||.|||||||||::|
  Rat   172 SFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 28/55 (51%)
Tlx3NP_001414519.1 None

Return to query results.
Submit another query.