DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and Hmx

DIOPT Version :9

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster


Alignment Length:747 Identity:159/747 - (21%)
Similarity:224/747 - (29%) Gaps:287/747 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SASAQNTAVGGLMSPNSNP------DSPKSNTSPDVASADSVVSGTGGGSTPPAAKIPKFIISAN 72
            |:|.....:..:.||..:|      |||....|| ..|||        ||:|||.          
  Fly     2 SSSEAEVDISVVSSPEPSPLGAAARDSPLLARSP-ARSAD--------GSSPPAT---------- 47

  Fly    73 GAAVAGKQEQELRYSLERLKQMSSESGSLLSRLSPLQEDSQDKEKPNHNNNNSLTNHNANSNTRR 137
                                                         |.|                |
  Fly    48 ---------------------------------------------PTH----------------R 51

  Fly   138 SQSPPASVGSVSFSSPAQQRKLLELNAVRHLARPEPLQHPHAALLQQHPHLLQNPQFLAAAQQHM 202
            |.:|..:.|:.:.|:....                              |...:|...|.....:
  Fly    52 SNTPNTAAGTPTTSASGGN------------------------------HFHHSPSGGAVPPAVL 86

  Fly   203 HHHQHQHH-----QHPAHPHSHQHPHPHPHP-HPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPP 261
            |||. |||     .||...|...|...|.|| |...||:.:.|              |.:|....
  Fly    87 HHHL-QHHLSSLGSHPVALHHALHTFGHLHPAHGATHPALLQH--------------ALTPTGQQ 136

  Fly   262 TSPAMHSDQQ--------MSPPIAPPQNPPHSSQPPQQQQVAAPSDMDLERIKLVAAVAARTTQA 318
            ....:...||        :|||:..|:.  :.....|...:...:...|......|:.||    |
  Fly   137 QQQQLQVQQQHQQSHVERLSPPMKSPER--NGGDEVQGHSLNNNNSKALNHNNTCASAAA----A 195

  Fly   319 SSTSALASASNSVSNASISISNSSSGSPSGRD--------------------------------- 350
            ::.:|:|:|  ::||.| :.||.|||...|:.                                 
  Fly   196 AAAAAVAAA--NLSNNS-NDSNGSSGGGGGKSTTGSNGFTSFSISSILSRSEPAKKNGAAGLITP 257

  Fly   351 -----------------LSDYGFRIQLGGLAAAAAAAAATSRQIAAATYA-RSDTSEELNVDGND 397
                             ||..||..|.|.||...||........|..... .|.|.     |.:.
  Fly   258 IPQLPQPGAGGPQDAAMLSRLGFISQWGALAGRYAALCPPGWPWAPQRLPFHSPTH-----DSSS 317

  Fly   398 EDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNK 462
            .::.:...|..|:.|.:...:.|::|::|.:|.|.|..                           
  Fly   318 TNTTENPPSPTSMSPNNNNNNSNTTASSNQASKSPSHH--------------------------- 355

  Fly   463 LPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQ------DDMCDDGSDIDD----- 516
             |..|..||.....::.::.|.:....|.:....|......|      ......||.:..     
  Fly   356 -PLHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQHPHQPTTPTSSSSSGGGSSLTHHPHPH 419

  Fly   517 ----------PSSETDSKKGGS---RNGDGKSG-------GGGGGGSKPRRARTAFTYEQLVSLE 561
                      |||..:|.:.|.   ...||..|       .|.|...:.::.||.|:..|:..||
  Fly   420 LTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSSSPHGDGNSKRKKKTRTVFSRAQVFQLE 484

  Fly   562 NKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTIPPPGGGSFGPGA 626
            :.|...||||..||..||.||.||||||||||||||.|||:|         ........:....|
  Fly   485 STFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQ---------LAAELEAANMANMA 540

  Fly   627 YASGLLYSHAVPY---------PPYGPYFHPL 649
            :|:..|....|.|         ||..|:.||:
  Fly   541 HAAQRLVRVPVLYHDGTTAGFVPPPPPHHHPM 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeobox 549..601 CDD:278475 32/51 (63%)
HmxNP_001262674.1 Homeobox 471..524 CDD:278475 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 42 1.000 Inparanoid score I5492
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.970

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