DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and nkx1.2lb

DIOPT Version :9

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_998713.1 Gene:nkx1.2lb / 407077 ZFINID:ZDB-GENE-040615-2 Length:373 Species:Danio rerio


Alignment Length:363 Identity:132/363 - (36%)
Similarity:166/363 - (45%) Gaps:106/363 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 RIQLGGLAAAAAAAAAT--------SRQIAAATYARSDTSEELN----VDGNDEDSNDGSHSTPS 409
            ::|:|...|.|.|....        .:::||.         ||.    |.|.|....:...::|.
Zfish     5 KVQVGDSVAPAGAGVIVVAPQDGMDDKRLAAG---------ELPVFNCVGGRDALPAESRETSPR 60

  Fly   410 VCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFT--------------- 459
            ..||        .|.|.|:...|:            :|||.:||||||||               
Zfish    61 HEPV--------PAGAPPTVHRTT------------SFSVLDILDPNKFTSKRQTPNRTGCEFAF 105

  Fly   460 GNKLPSGPFGHP-RQWSYERDEEMQE-----------RLDDDQSEDMSAQDLNDMD-QDDMCDDG 511
            |.:..|....|. ...||:.|.:.::           |.|:.:| |.:..:.:|.: |:|:|.:.
Zfish   106 GAENRSDDSNHTIEHKSYQEDYDCKKTSGILKDGFVFRSDECES-DFTRGNQSDSELQEDLCSEE 169

  Fly   512 S---------------DIDDPSSETDSK--KGGSRNGDG-------KSGGGGGGGSKPRRARTAF 552
            |               |.|..|...|.:  :..|.||..       |..|......|||||||||
Zfish   170 SSALTGNNDAEFGQHEDDDSISKSPDGQQTQQSSSNGQNHQVKPKRKRSGSDSKSGKPRRARTAF 234

  Fly   553 TYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTIPPP 617
            ||||||:||||||:||||||||||||||||||||||||||||||||||||||||.|.::||  ..
Zfish   235 TYEQLVALENKFKSTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPT--SG 297

  Fly   618 GGGSFGPGAYASGLLYSHAVPYPPYGPYFHPLGAHHLS 655
            |||..||.....||  |...|.||.        :.|||
Zfish   298 GGGGNGPSNGLGGL--SPLSPSPPM--------SGHLS 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeobox 549..601 CDD:278475 49/51 (96%)
nkx1.2lbNP_998713.1 Homeobox 231..283 CDD:278475 49/51 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 114 1.000 Domainoid score I6042
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25809
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24340
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2564
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.130

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