DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and nkx1.2la

DIOPT Version :9

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_997995.2 Gene:nkx1.2la / 405755 ZFINID:ZDB-GENE-040615-1 Length:270 Species:Danio rerio


Alignment Length:279 Identity:105/279 - (37%)
Similarity:124/279 - (44%) Gaps:93/279 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   435 SSDRDAATKRLAFSVENILDPNKFTGNKLPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSA--Q 497
            |..:..:..|::||:.:||||.|||..|               .|...:||....::....:  :
Zfish     7 SGGKGTSDHRISFSIIDILDPTKFTSKK---------------TDVSEKERTSSSENTGFGSLEE 56

  Fly   498 DLNDMDQDDMC-------------------DDGSDIDDPSSETDSKKGGS--------------- 528
            ..|....|..|                   |...|.|..||....|.|.|               
Zfish    57 SRNGKHSDGECESTGDRSDDRHGCVRLHPPDPDVDFDCSSSHRSLKSGFSPCEDPDEAAEERMTP 121

  Fly   529 ----------RNGDGKSGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLS 583
                      |..|...       :|||||||||||||||:|||||:.|||||||||||||||||
Zfish   122 APDDVSRQRRRRSDHSC-------AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLS 179

  Fly   584 LTETQVKIWFQNRRTKWKKQNPGMD------VNS-PTIPPPGGGSFGPGAYASGLLYSHAVPYPP 641
            |||||||||||||||||||||||::      .|| |.|.|..|.       ||.|       :||
Zfish   180 LTETQVKIWFQNRRTKWKKQNPGVESSLQAGTNSLPNISPSCGS-------ASAL-------HPP 230

  Fly   642 YGP---YFHPLGAHHLSHS 657
            :..   .||. |..||:.|
Zfish   231 FSTGNMIFHS-GPVHLASS 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeobox 549..601 CDD:278475 48/51 (94%)
nkx1.2laNP_997995.2 Homeobox 145..197 CDD:278475 48/51 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007326
OrthoInspector 1 1.000 - - otm25809
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24340
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2564
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.040

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