DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and hoxd3a

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:408 Identity:100/408 - (24%)
Similarity:135/408 - (33%) Gaps:167/408 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   381 TYARSDT-SEELNVDGNDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKR 444
            :|.:||: :......|....|.:..:.:| :||:. |.||..         :|..:.|.:.:..|
Zfish    17 SYPKSDSYTYGPTHQGFSSSSIENDYQSP-ICPIQ-TTSVRQ---------ATHKNGDINGSCMR 70

  Fly   445 LAFSVENILDPNKFTGNKLPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCD 509
                      |:...||..|               |.:.|:   .|:..::|             
Zfish    71 ----------PSASQGNSQP---------------ESISEQ---QQAAPLAA------------- 94

  Fly   510 DGSDIDDPSSETDS---KKGGSRNG-------------------------------------DGK 534
                 ..||..|:|   ||..|.||                                     |.|
Zfish    95 -----SSPSPSTNSTQKKKSPSSNGSSTATPVISKQIFPWMKETRQNAKQKSTNCPAAGETCDDK 154

  Fly   535 SGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 599
            |..|...    :|.|||:|..|||.||.:|...|||....|:.:|..|:|||.|:||||||||.|
Zfish   155 SPPGPAS----KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 215

  Fly   600 WKKQNPGMDV------NSPTIPPPGGGSFGPGAYASGLL-----YSHAVPYPP---------YG- 643
            :||......:      :||...||..||...|  .||.|     .|:..|.||         || 
Zfish   216 YKKDQKSKGIMHSPLGHSPDRSPPLSGSNHIG--YSGQLPNVNSLSYDAPSPPSFAKPQQNIYGL 278

  Fly   644 -PYFHPLGA--------------HHLSHSHS--XNCKMQQRLLQLFEKRGRAVAGG----AGPAA 687
             .|..|||.              ||....:.  .|..:|.         .....||    :.||:
Zfish   279 AAYTAPLGGCIPQQKRYPGTEYDHHSMQGNGSFANANLQS---------SPVYVGGNFVDSMPAS 334

  Fly   688 G------------SGSVD 693
            |            |.|||
Zfish   335 GPMFNLGHLPHPSSASVD 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 30/55 (55%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 35/205 (17%)
COG5576 116..237 CDD:227863 38/124 (31%)
Antp-type hexapeptide 126..131 0/4 (0%)
Homeodomain 162..218 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 6/26 (23%)
DUF4074 333..394 CDD:463833 6/20 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.