DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and pou5f3

DIOPT Version :9

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_571187.1 Gene:pou5f3 / 30333 ZFINID:ZDB-GENE-980526-485 Length:472 Species:Danio rerio


Alignment Length:574 Identity:117/574 - (20%)
Similarity:188/574 - (32%) Gaps:188/574 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 TRRSQSPPASVGSVSFSSPAQQRKLLELNAVRHLARPEPLQHPHAALLQ-------QHPH-LLQN 191
            |.|:|||.|:           ..:..|:|..         .:|.||.|.       |..| :||:
Zfish     2 TERAQSPTAA-----------DCRPYEVNRA---------MYPQAAGLDGLGGASLQFAHGMLQD 46

  Fly   192 PQFLAAAQQHMHHHQHQHHQHPAHPHSHQHPHP--------------HPHPHPHPHPSAVFHLRA 242
            |..:.          ::.|.:...|.:.|...|              ...| .|.:|.|......
Zfish    47 PSLIF----------NKAHFNGITPATAQTFFPFSGDFKTNDLQGGDFTQP-KHWYPFAAPEFTG 100

  Fly   243 PSSSSTAPPSPATSPLSPPTSPA-----MHSDQQMSPPIAPPQNPPHSSQPPQQQQVAA-----P 297
            ..:.:||...||.  :|||....     |.|:.:....:....|  ..::||.|..:.|     |
Zfish   101 QVAGATAATQPAN--ISPPIGETREQIKMPSEVKTEKDVEEYGN--EENKPPSQYHLTAGTSSVP 161

  Fly   298 SDMD------------LERIKLVAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRD 350
            :.::            |.:|         |.||:.:.|..:.|.|        |.|.|.||.|..
Zfish   162 TGVNYYTPWNPNFWPGLSQI---------TAQANISQAPPTPSAS--------SPSLSPSPPGNG 209

  Fly   351 LSDYGFRIQLGGLAAAAAAAAATS--RQIAAATYARSDTSEE--LNVDGNDEDSNDGSHSTPSVC 411
            ....||  ..||.|....:|.|.|  |...:::...||:.||  |..:..::.:.:..|..   .
Zfish   210 FGSPGF--FSGGTAQNIPSAQAQSAPRSSGSSSGGCSDSEEEETLTTEDLEQFAKELKHKR---I 269

  Fly   412 PVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNKLPSGPFGHPRQWSY 476
            .:..|::....|..|......|.::.......:|:|.            |.....|.        
Zfish   270 TLGFTQADVGLALGNLYGKMFSQTTICRFEALQLSFK------------NMCKLKPL-------- 314

  Fly   477 ERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGG 541
                 :|..|::.::.: :.||:..:::              ...|::|                
Zfish   315 -----LQRWLNEAENSE-NPQDMYKIER--------------VFVDTRK---------------- 343

  Fly   542 GSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 606
                |:.||:.......:||:.|......:..|..:::..|.|....|::||.|||.|.|:....
Zfish   344 ----RKRRTSLEGTVRSALESYFVKCPKPNTLEITHISDDLGLERDVVRVWFCNRRQKGKRLALP 404

  Fly   607 MD---------VNSPTIPPPGGGSFGPGAYASGLLYSHAVPYPPYGPYFHPLGA 651
            .|         ..||..||..||:..||.           .||  || .||.||
Zfish   405 FDDECVEAQYYEQSPPPPPHMGGTVLPGQ-----------GYP--GP-AHPGGA 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeobox 549..601 CDD:278475 15/51 (29%)
pou5f3NP_571187.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..154 6/28 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..255 23/77 (30%)
POU 259..323 CDD:197673 11/91 (12%)
Homeobox 346..399 CDD:278475 15/52 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 42 1.000 Inparanoid score I5492
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.050

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