DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and Nkx1-1

DIOPT Version :9

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_234082.6 Gene:Nkx1-1 / 298981 RGDID:1564874 Length:443 Species:Rattus norvegicus


Alignment Length:499 Identity:145/499 - (29%)
Similarity:185/499 - (37%) Gaps:177/499 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 PHPHPHPHPSAVFHLRAPSSSSTAPPSPATS-----------PLSP----------PTSPAMHSD 269
            |.|.|.|.|          .|..|||:||.:           |:.|          .|.||:...
  Rat    16 PPPPPPPEP----------GSGPAPPAPAATARDAMDGRAELPIFPRAGVPPLAVSDTVPAVPDG 70

  Fly   270 QQMSPPIAPPQNPPHSSQPPQQQQVAAPSDMDLERIK--LVAAVAARTTQASSTSALASASNSVS 332
            ...:.|.|||:....|     ...:..|:..:..|.:  |:..|...|....:.:          
  Rat    71 AGAARPAAPPRPTSFS-----VLDILDPNKFNSRRRRCVLLGPVVPATCAPCAPA---------- 120

  Fly   333 NASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAAATSRQIAAATYARSDTSEELNVDGND 397
             |.:.:..:|..||..        .::...|:||...||||                        
  Rat   121 -ACVPVPAASGRSPRA--------ELERRALSAATGVAAAT------------------------ 152

  Fly   398 EDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNK 462
                                      .|.|:|...|..:|...|                   |.
  Rat   153 --------------------------GAEPTSTGDSYRADEAEA-------------------NG 172

  Fly   463 LPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQ-----------DDMCDDGSDIDD 516
            ..||....|...|  .||..:|..|:||:.::  ||:...::           ...|...::::.
  Rat   173 YSSGSGRSPTADS--EDEAPEEDEDEDQAPEV--QDVQGTEEPRGGSGGLGARGSGCSGAAEVEA 233

  Fly   517 PSSETDSKKGGSRNGDGKSG------GGGGGGS-----------------------KPRRARTAF 552
            ...:..:..|...|..|..|      |.|..||                       |||||||||
  Rat   234 SPVDEAAAPGPRGNSPGAPGPPVTAAGAGNAGSTPQGAAVATKPKRKRTGSDSKSGKPRRARTAF 298

  Fly   553 TYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTIPPP 617
            ||||||:||||||.||||||||||||||||||||||||||||||||||||||||.|.::||   .
  Rat   299 TYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPT---G 360

  Fly   618 GGGSFGPGAYASGLLYSHAVPYPPYGPYFHPLGAH----HLSHS 657
            |||..||||.....|.....|..|..|...||..|    :.:||
  Rat   361 GGGGPGPGAGPGAGLPGGLSPLSPSPPMGAPLALHGPAGYPAHS 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeobox 549..601 CDD:278475 49/51 (96%)
Nkx1-1XP_234082.6 Homeobox 295..347 CDD:278475 49/51 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 114 1.000 Domainoid score I5923
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto98062
orthoMCL 1 0.900 - - OOG6_109243
Panther 1 1.100 - - O PTHR24340
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.810

Return to query results.
Submit another query.