DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and Hmx3

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_001099772.1 Gene:Hmx3 / 293537 RGDID:1559927 Length:356 Species:Rattus norvegicus


Alignment Length:479 Identity:113/479 - (23%)
Similarity:146/479 - (30%) Gaps:193/479 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 PHPHPSAVFHLRAPSSSSTAPPSPATSPLSPPTSP-----AMHSDQQMSPPIAPPQNPPHSSQPP 289
            |.|.|.      |..::|..||.|...|.:|..||     .::.|....||  .||.||      
  Rat     2 PEPGPD------ASGTASAPPPQPPPQPPAPKESPFSIRNLLNGDHHRPPP--KPQPPP------ 52

  Fly   290 QQQQVAAPSDMDLERIKLVAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDY 354
                                    ||..|.:::|.|                             
  Rat    53 ------------------------RTLFAPASAAAA----------------------------- 64

  Fly   355 GFRIQLGGLAAAAAAAAATSRQIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSV 419
                     |||||||||......||.:|.|...                               
  Rat    65 ---------AAAAAAAAAKGALEGAAGFALSQVG------------------------------- 89

  Fly   420 NSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNK---------LPSGPFGH-PRQW 474
                               |.|..|.....:....|..:....         .|:|  || ||..
  Rat    90 -------------------DLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAG--GHLPRPE 133

  Fly   475 SYE----RDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNG---- 531
            :.|    ||.......|.|..:.:...|.:..:.|....|...:::..||...|:|.:..|    
  Rat   134 ASEKALLRDSSPASGTDRDSPDPLLKADPDHKELDSKSPDEIILEESDSEEGKKEGEAVPGAAGT 198

  Fly   532 ------------DGKSGGGGGGGSKP----RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLAL 580
                        |.|: |......||    ::.||.|:..|:..||:.|...||||..||..||.
  Rat   199 TVGATAATPGSEDWKA-GADSPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAA 262

  Fly   581 SLSLTETQVKIWFQNRRTKWKKQNPG-------------MDVNSPTIPPPGGGSFGPGAYASG-- 630
            ||.||||||||||||||.|||:|...             ..|..|.:......:.|..|.|..  
  Rat   263 SLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAGAPV 327

  Fly   631 -----LLYSHAVPYPPYGPYFHPL 649
                 ||   ..|:|.|  |.||:
  Rat   328 PVSQPLL---TFPHPVY--YSHPV 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 33/55 (60%)
Hmx3NP_001099772.1 Homeodomain 228..284 CDD:459649 33/55 (60%)

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