Protein Alignment slou and lin-39

DIOPT Version :10

• Sequence 1: NP_001262808.1
• Gene: slou / 42547
• FlyBaseID: FBgn0002941
• Length: 698
• Species: Drosophila melanogaster
• Sequence 2: NP_001021164.1
• Gene: lin-39 / 176068
• WormBaseID: WBGene00003024
• Length: 253
• Species: Caenorhabditis elegans
• Alignment Length: 366
• Identity: 103/366 - (28%)
• Similarity: 143/366 - (39%)
• Gaps: 134/366 - (36%)

  Fly   296 APSDMDLERIKLVAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDYGFRIQL 360
            :||..|          |.|.|...|:|:.:|:|:|.|:.|   |..:||.||..:||.   .|..
 Worm     6 SPSSTD----------APRATAPESSSSSSSSSSSSSSTS---SVGASGIPSSSELSS---TIGY 54

  Fly   361 GGLAAAAAAAA--------ATSRQIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTR 417
            ..:.|:||.:|        .:|.||  |:|..|  |:.|           |....|.:
 Worm    55 DPMTASAALSAHFGSYYDPTSSSQI--ASYFAS--SQGL-----------GGPQYPIL------- 97

  Fly   418 SVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNKLPSGPFGHPRQWSY-ERDEE 481
             .:.|...|||..||.                                      ..|.: |.|:
 Worm    98 -GDQSLCYNPSVTSTH--------------------------------------HDWKHLEGDD- 122

  Fly   482 MQERLDDDQSED---MSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGS 543
                 |||:.:|   :|..| :|||:    :.|..:....:...|..||||            |.
 Worm   123 -----DDDKDDDKKGISGDD-DDMDK----NSGGAVYPWMTRVHSTTGGSR------------GE 165

  Fly   544 KPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMD 608
            |  |.|||:|..|::.||.:|.|.:||:...|:.:|.||.|||.||||||||||.|.||:|....
 Worm   166 K--RQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENKDKP 228

  Fly   609 VNSPTIPPPGGGSFGPGAYASGLLYSHAVPYPPYGPYFHPL 649
            :..|.:|      ||...              |:||:..||
 Worm   229 MTPPMMP------FGANL--------------PFGPFRFPL 249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
slou	NP_001262808.1	Homeodomain	546..602	CDD:459649	30/55 (55%)
lin-39	NP_001021164.1	Homeodomain	166..222	CDD:459649	31/57 (54%)