DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and Hoxd3

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:512 Identity:113/512 - (22%)
Similarity:152/512 - (29%) Gaps:257/512 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 PHPHPHPHPSAVFHLRA--PSSS----STAP-PSPA-------TSPLSPPTS-----------PA 265
            || .|:|.|:|...|.:  |||:    |:|| .:||       .|.:.|.|.           |.
Mouse    46 PH-QPYPPPAAANSLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPG 109

  Fly   266 MHSDQQMSPPIAPPQNPPHSSQPPQQQQVAAPSDMDLERIKLVAAVAARTTQASSTSALASASNS 330
            ::|:||  ||..||  ||..:.||.                                        
Mouse   110 LNSEQQ--PPQPPP--PPPPTLPPS---------------------------------------- 130

  Fly   331 VSNASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAAATSRQIAAATYARSDTSEELNVDG 395
                  |.:|..||.|:.:         ..||| :|:::::..|:||..........|::.|   
Mouse   131 ------SPTNPGSGVPAKK---------TKGGL-SASSSSSTISKQIFPWMKESRQNSKQKN--- 176

  Fly   396 NDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTG 460
                                             |.:||..:..|                     
Mouse   177 ---------------------------------SCATSGENCED--------------------- 187

  Fly   461 NKLPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKK 525
             |.|.||                                                          
Mouse   188 -KSPPGP---------------------------------------------------------- 193

  Fly   526 GGSRNGDGKSGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVK 590
                              ..:|.|||:|..|||.||.:|...|||....|:.:|..|:|||.|:|
Mouse   194 ------------------ASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK 240

  Fly   591 IWFQNRRTKWKKQNPGMDV------NSPTIPPPGGGSFGPGAYAS------GLLYSHAVPYPP-- 641
            |||||||.|:||......:      .||...||.||:.|..||:.      ||.|.  .|.||  
Mouse   241 IWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYD--APSPPAF 303

  Fly   642 -------YG--PYFHPLGAHHLSHSHSXNCKMQQRLLQL--FEKRGRAVAGGAGPAA 687
                   ||  .|..||          .:|..||:....  ||....|..||...:|
Mouse   304 AKSQPNMYGLAAYTAPL----------SSCLPQQKRYPAPEFEPHPMASNGGGFASA 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 30/55 (55%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 52/346 (15%)
Antp-type hexapeptide 161..166 1/4 (25%)
Homeodomain 196..252 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 6/21 (29%)
DUF4074 370..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
Blue background indicates that the domain is not in the aligned region.

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