DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slou and Hoxa9

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_034586.1 Gene:Hoxa9 / 15405 MGIID:96180 Length:271 Species:Mus musculus


Alignment Length:174 Identity:54/174 - (31%)
Similarity:69/174 - (39%) Gaps:42/174 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 LDPN----KFTGNKLPSG-PFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGS 512
            |:|.    .|.|  |||. |:|       .:.|.:..|..|..:.|.....|.|.    .|  ||
Mouse   111 LEPTPGALSFAG--LPSSRPYG-------IKPEPLSARRGDCPTLDTHTLSLTDY----AC--GS 160

  Fly   513 DIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKP-----------------RRARTAFTYEQLVSL 560
            ...|...:.........|.:.:|     ||.||                 |:.|..:|..|.:.|
Mouse   161 PPVDREKQPSEGAFSENNAENES-----GGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLEL 220

  Fly   561 ENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 604
            |.:|....||:...|..:|..|:|||.||||||||||.|.||.|
Mouse   221 EKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 26/55 (47%)
Hoxa9NP_034586.1 Hox9_act 1..192 CDD:461369 25/100 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..197 11/53 (21%)
Homeodomain 206..262 CDD:459649 26/55 (47%)

Return to query results.
Submit another query.