DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and Hmx3

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_032283.3 Gene:Hmx3 / 15373 MGIID:107160 Length:356 Species:Mus musculus


Alignment Length:483 Identity:112/483 - (23%)
Similarity:143/483 - (29%) Gaps:201/483 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 PHPHPSAVFHLRAPSSSSTAPPSPATSPLSPPTSP-----AMHSDQQMSPPIAPPQNPPHSSQPP 289
            |.|.|.      |..::|..||.|...|.:|..||     .::.|....||  .||.||      
Mouse     2 PEPGPD------ASGTASAPPPQPPPQPPAPKESPFSIRNLLNGDHHRPPP--KPQPPP------ 52

  Fly   290 QQQQVAAPSDMDLERIKLVAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDY 354
                                    ||..|.:::|.|                             
Mouse    53 ------------------------RTLFAPASAAAA----------------------------- 64

  Fly   355 GFRIQLGGLAAAAAAAAATSRQIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSV 419
                     |||||||||......||.:|.|...                               
Mouse    65 ---------AAAAAAAAAKGALEGAAGFALSQVG------------------------------- 89

  Fly   420 NSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNK---------LPSGPFGH-PRQW 474
                               |.|..|.....:....|..:....         .|:|  || ||..
Mouse    90 -------------------DLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAG--GHLPRPE 133

  Fly   475 SYE----RDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGKS 535
            :.|    ||.......|.|..|.:...|.:..:.|....|...:::..||.     |.:.|:...
Mouse   134 ASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEE-----GKKEGEAVP 193

  Fly   536 GGGG----------------GGGSKP--------RRARTAFTYEQLVSLENKFKTTRYLSVCERL 576
            |..|                .|...|        ::.||.|:..|:..||:.|...||||..||.
Mouse   194 GAAGTTVGATTATPGSEDWKAGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERA 258

  Fly   577 NLALSLSLTETQVKIWFQNRRTKWKKQNPG-------------MDVNSPTIPPPGGGSFGPGAYA 628
            .||.||.||||||||||||||.|||:|...             ..|..|.:......:.|..|.|
Mouse   259 GLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAA 323

  Fly   629 SG-------LLYSHAVPYPPYGPYFHPL 649
            ..       ||   ..|:|.|  |.||:
Mouse   324 GAPVPVSQPLL---TFPHPVY--YSHPV 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 33/55 (60%)
Hmx3NP_032283.3 Homeodomain 228..284 CDD:459649 33/55 (60%)

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