DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and hoxc10a

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_017208987.1 Gene:hoxc10a / 100535576 ZFINID:ZDB-GENE-990415-110 Length:337 Species:Danio rerio


Alignment Length:400 Identity:82/400 - (20%)
Similarity:123/400 - (30%) Gaps:156/400 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 HPHSHQHPHPHPHPHPHPHPSAVFHLR-----APSSSSTAPPSPATSPLSPPTSPAMHSDQQMSP 274
            |..|:||.|               :|.     ...|.:.....|...||.|.:.||.:..::..|
Zfish    70 HLGSYQHSH---------------YLSQRDTWIAGSKTYRGSQPVAQPLHPCSFPASNVKEEAIP 119

  Fly   275 PIAPPQNPPHSSQPPQQQQVAAPSDMDLERIKLVAAVAARTTQASSTSALASASNSVSNASISIS 339
            .:..|                   |:|          :|:.:...||......:||..|      
Zfish   120 CLYQP-------------------DID----------SAKESGEKSTYIRLGDNNSHPN------ 149

  Fly   340 NSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAAATSRQIAAATYA--RSDTSEELNVDGNDEDSND 402
            .|:..:|      ||..|.|:                     ||  |....:|...|.|      
Zfish   150 QSAVSTP------DYFRRSQV---------------------YASERGHHGDEFGSDFN------ 181

  Fly   403 GSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNKLPSGP 467
                     |:.   .:::...|..|.:...:|..|.                            
Zfish   182 ---------PIP---RISTPVEALASDSCVKSSKARQ---------------------------- 206

  Fly   468 FGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGD 532
              ||        |:......:|..:....:....:.:.:.|.|    |..|...|..|.....|:
Zfish   207 --HP--------EDKGGNTQEDDMDQRQTRKEESVSKTESCTD----DSESELKDESKLEKATGN 257

  Fly   533 ---GKSGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQ 594
               .|||         |:.|..:|..|.:.||.:|....||:...||.::.|::||:.|||||||
Zfish   258 WLKAKSG---------RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQ 313

  Fly   595 NRRTKWKKQN 604
            |||.|.||.|
Zfish   314 NRRMKLKKLN 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 25/55 (45%)
hoxc10aXP_017208987.1 Homeodomain 265..321 CDD:459649 25/55 (45%)

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