DRSC/TRiP Functional Genomics Resources

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Protein Alignment slou and nkx2-3

DIOPT Version :10

Sequence 1:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_002937234.1 Gene:nkx2-3 / 100486189 XenbaseID:XB-GENE-852996 Length:328 Species:Xenopus tropicalis


Alignment Length:428 Identity:101/428 - (23%)
Similarity:137/428 - (32%) Gaps:176/428 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 PSPATS-PLSPPTSPAMHSDQQMSPPIAPPQNPPHSSQPPQQQQVAAPS---DMDLERIKLVAAV 311
            |||.|| |.|  ....::.:||..||||.||   |..|...:...|.|:   |.|.::...:.|.
 Frog     4 PSPVTSTPFS--VKDILNLEQQGQPPIAHPQ---HLQQQCSRAHPAHPAQDLDSDFQQASCMLAA 63

  Fly   312 AARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAAAAAAATSRQ 376
            ..|...|.....|.           .:|...:..|.|    |.|.               :..|.
 Frog    64 GERCVYAGGEDKLP-----------FLSAMGAAEPHG----DVGL---------------SPDRY 98

  Fly   377 IAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAA 441
            :|.     .|..||   |..:|||              |....|.|...                
 Frog    99 VAL-----RDPKEE---DEEEEDS--------------LREGGNKSCFL---------------- 125

  Fly   442 TKRLAFSVENILDPNKFTGNKLPSGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDD 506
                               ||.|.|                                        
 Frog   126 -------------------NKSPDG---------------------------------------- 131

  Fly   507 MCDDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLS 571
               :|. ::||    |..|..||                |:.|..|:..|:..||.:||..||||
 Frog   132 ---EGK-LEDP----DRPKQRSR----------------RKPRVLFSQAQVFELERRFKQQRYLS 172

  Fly   572 VCERLNLALSLSLTETQVKIWFQNRRTKWK--KQNPGMDVNSPTIPPP-----------GGGSFG 623
            ..||.:||.||.||.|||||||||||.|.|  :|:..:::.:...|||           |....|
 Frog   173 APEREHLANSLKLTSTQVKIWFQNRRYKCKRQRQDKSLEMGTHHPPPPRRVAVPVLVRDGKPCIG 237

  Fly   624 PGAYASGLLYSHAVPYPPYGPYFHPLGAHHLSHSHSXN 661
             |:.:....|:  |...||....:|..:::.|.|:: |
 Frog   238 -GSQSYNTAYN--VTASPYSYNSYPAYSYNNSPSYNTN 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slouNP_001262808.1 Homeodomain 546..602 CDD:459649 33/57 (58%)
nkx2-3XP_002937234.1 Homeodomain 147..203 CDD:459649 32/55 (58%)

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