DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sp3 and RHD4

DIOPT Version :10

Sequence 1:NP_001036740.2 Gene:sp3 / 42545 FlyBaseID:FBgn0038890 Length:1142 Species:Drosophila melanogaster
Sequence 2:NP_190714.2 Gene:RHD4 / 824309 AraportID:AT3G51460 Length:597 Species:Arabidopsis thaliana


Alignment Length:536 Identity:166/536 - (30%)
Similarity:253/536 - (47%) Gaps:105/536 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GIVGVISLPNVYEPHLVVVKEASAVGVLYPPHLVYKIKSICILSADDPDTDLPNCTKHTKSNQST 114
            |:||::.|  :...:||||.|:..|| .:..|.::|:.::.:|..|                   
plant    67 GVVGMLKL--LAGSYLVVVTESERVG-SFLGHPIFKVTTLKVLPCD------------------- 109

  Fly   115 PTHSVSTSNNNNASVPSSGGGSSKSTKLFEGMNKTWGAVKSAGNTIKNTTQQAANLATKQVKSSV 179
              ||                                         :||:.::...:.|:..|   
plant   110 --HS-----------------------------------------LKNSPEEQKKMETEFSK--- 128

  Fly   180 GIREPRHIERRITEELHKIFDETDSFYFSFDCDITNNLQRHEAKSEESQSQP-----DERFFWNK 239
                           |..:.::|...|||::.::|.:.||.....:||:|.|     :.||.||.
plant   129 ---------------LLSVAEKTTGLYFSYEVNLTLSSQRLHEMGDESKSLPLWRQAEPRFLWNN 178

  Fly   240 HMIRDLINLNDKTWILPIIQGFMQVENCVIGNECFTLALVSRRSRHRAGTRYKRRGVDEKGNCAN 304
            :|:..||:.....::||:|||........||.:...:.|::||...|.|||..|||.|..|..||
plant   179 YMLEVLIDNKLDQFLLPVIQGSFNSFETAIGRDIVDITLIARRCTRRNGTRMWRRGADLDGYVAN 243

  Fly   305 YVETEQILSFRHHQLSFTQVRGSVPIYWSQ-------PGYKYRPPPRLDRGVAETQQAFELHFTK 362
            :||||||:....:..||.|||||:|..|.|       |.::...|       .|.::..|.||..
plant   244 FVETEQIVQMNGYTSSFVQVRGSMPFMWEQVVDLTYKPKFEIVQP-------EEAKRIAERHFLD 301

  Fly   363 ELETYGRVCIVNLVEQSGKEKTIGDAYADHVIKLNNDRLIYVTFDFHDYCRGMRFENVSALIDAV 427
            ..:.||.|..|:||.:.|.|..:.:.||..:..:..|.:.|:.||||..|..:.||.:|.|.:.:
plant   302 LRKKYGSVLAVDLVNKQGGEGRLCEKYATVMQHITGDDIRYLHFDFHQICGHIHFERLSILYEQI 366

  Fly   428 GPEAGAMGFHWRDQRG-MICNQKSVFRVNCMDCLDRTNVVQTAIGKAVLESQLVKLGLSPPYTPI 491
            .......|:...:::| .:..|..|.|.||:||||||||.|:.||:.:||.||.::|:......|
plant   367 EGFLEKNGYFLLNEKGEKMKEQLGVVRSNCIDCLDRTNVTQSMIGRKMLEVQLKRIGVFGAEETI 431

  Fly   492 PEQLK--SPFMVLWANNGDIISRQYAGTNALKGDYTRTGERKISGMMKDGMNSANRFFIQNFADS 554
            ...|.  ..:.:||||:||.||.||:||.|||||:.|.|.|...|::|||.:|..|:::.||||.
plant   432 SSHLNFDEHYKILWANHGDEISIQYSGTPALKGDFVRYGHRTAHGVLKDGWSSLRRYYLNNFADG 496

  Fly   555 FRQCIIDLMQGQLLRA 570
            .:|..|||:||..:.|
plant   497 TKQDAIDLLQGHYIVA 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sp3NP_001036740.2 COG5329 <197..586 CDD:227637 144/389 (37%)
hSac2 663..768 CDD:463592
RHD4NP_190714.2 COG5329 65..551 CDD:227637 166/536 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.