DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7956 and sh2d1aa

DIOPT Version :9

Sequence 1:NP_001036740.2 Gene:CG7956 / 42545 FlyBaseID:FBgn0038890 Length:1142 Species:Drosophila melanogaster
Sequence 2:NP_001108163.1 Gene:sh2d1aa / 797046 ZFINID:ZDB-GENE-060526-212 Length:106 Species:Danio rerio


Alignment Length:108 Identity:23/108 - (21%)
Similarity:38/108 - (35%) Gaps:29/108 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   798 EEVAESMTSIVE----------------MFRIALDNAGNTEVRYITGGVLQR----RKSKLPTLD 842
            |::||...||.:                :.|.:|.:||...|..:..|.:..    .|..|.|::
Zfish     2 EDLAEYHGSISKKQAEDILCSTGRDGSYLIRDSLSSAGAYCVCVLCDGWVYTYRIFNKGGLWTIE 66

  Fly   843 VPRGMPRNLSESQLVQLSSKALSNMAGQFSKLGQTFKKPQAHP 885
            :..||...|..:         :||:...|....|....|..:|
Zfish    67 MAPGMKERLFRN---------VSNLIAAFKMPDQGITFPLLYP 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7956NP_001036740.2 Syja_N 174..413 CDD:280532
COG5329 <197..586 CDD:227637
hSac2 663..768 CDD:289241
sh2d1aaNP_001108163.1 SH2 2..103 CDD:301589 23/108 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579688
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.