DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7956 and synj2

DIOPT Version :9

Sequence 1:NP_001036740.2 Gene:CG7956 / 42545 FlyBaseID:FBgn0038890 Length:1142 Species:Drosophila melanogaster
Sequence 2:NP_001135511.1 Gene:synj2 / 100216051 XenbaseID:XB-GENE-980087 Length:1553 Species:Xenopus tropicalis


Alignment Length:1108 Identity:263/1108 - (23%)
Similarity:426/1108 - (38%) Gaps:276/1108 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 IREPRHIERRITEELHKIFDETDSFYFSF-----DCDITNNLQRHEAKSEESQSQPDERFFWNK- 239
            ::|....|.|:| .|.||.: :..||||:     :.|:|:..|:   ::..|..:....||||: 
 Frog   106 LQEETKEEERVT-ALRKILN-SGMFYFSWPNAGSNFDLTHRAQK---QAVNSSCESGNWFFWNRL 165

  Fly   240 -HMIRDLINLNDKTWILPIIQGFMQVENCVIGNECFTLALVSRRSRHRAGTRYKRRGVDEKGNCA 303
             |:......::...|:|.:|.|.:::......:......|:||.|..|||.|:..||||:.|:.:
 Frog   166 LHVPLKHYQVSCADWLLKVICGGVEIRTVYASHRKAKACLISRISCARAGARFHIRGVDDDGHVS 230

  Fly   304 NYVETEQILSFRHHQLSFTQVRGSVPIYWSQPGYKYRPPP-RLDRGVAETQQAFELHFTKELETY 367
            |:|||||.:.......||.|:|||||::|.|||.:..... :|.||:.....||:.|.....|.|
 Frog   231 NFVETEQTVYVDDDVSSFVQIRGSVPMFWEQPGLQVGSHHLKLTRGLEANAPAFDRHMMLLKEQY 295

  Fly   368 GRVCIVNLVEQSGKEKTIGDAYADHV-IKLNNDRLIYVTFDFHDYCRGMRFENVSALI-DAVGPE 430
            |:..:|||:...|.|:.:..|:...: ..|:.|.:..:.||:|...:|.:.|.:..|: ..:..:
 Frog   296 GKQVLVNLLRSKGGEEVLSRAFKKLLWASLHADDVPMINFDYHQIVKGGKIEKLENLLKPQLKLD 360

  Fly   431 AGAMGFHWRDQRGMICNQKSVFRVNCMDCLDRTNVVQTAIGKAVLESQLVKLGLSPPYTPIPEQL 495
            ....|...|........||..||:||:|||.|||.||:.|...||.:||..||| .....:.|:.
 Frog   361 LEEFGVFTRGDNLTPRLQKGTFRINCLDCLHRTNSVQSYIALEVLRTQLESLGL-VDMKSVMERF 424

  Fly   496 KSPFMVLWANNGDIISRQYAGTNALKGDYTRTGERKISGMMKDGMNSANRFFIQNFADSFRQCII 560
            :..:..:|..||..:|..:.|:.||:      |:.|: |.:|||..:.:|....||.|..:|..|
 Frog   425 EESYKSMWTANGHNMSMIFTGSRALE------GKAKV-GKLKDGARTVSRTIQTNFFDGAKQEAI 482

  Fly   561 DLM------------QGQLLRAEDLQEDEVLSTILQILT---------PETRPPLHGYYNPGVLG 604
            |||            :|::|.  |.....|:.::|:.::         ..||..: |.:|  |.|
 Frog   483 DLMLMGDFFNEQYADKGRMLM--DSSALLVIPSVLKSISERQLEFTNYKRTRVAM-GTWN--VNG 542

  Fly   605 PELQLLESIVTTSYYLARFKDSYRQATIDLMLGNQVSSESLSALGGQ------AGPDENDGTEN- 662
            .: |....|::||.......||.:.:.......::.:...:.|:|.:      ||...:..|.| 
 Frog   543 GK-QFRSKILSTSELTDWLLDSPKLSGTPDFQDDESNPPDIFAVGFEEMVELSAGNIVSASTTNR 606

  Fly   663 ---AEQAKLLVEDCRRLLLGTAQYPVGAWGLIDADP-SSGDINETEVDTI--------------- 708
               |||.:..:....|.:|.|:...||....:...| ....|.:...||:               
 Frog   607 KVWAEQIQKALSRSHRYILLTSGQLVGVCLFVFVRPYHMPFIRDVATDTVKTGLGGKTGNKGAVA 671

  Fly   709 ----LLLTDDCYIVAEYDSHLDKIVRFEK--VQLTQVRLIELGMHQQTKIFQGSAPAH----LCL 763
                ...|..|:|.:.:.:..:::....:  .::||.....:|.:    :|     :|    .|.
 Frog   672 IRFQFYSTSFCFICSHFTAGQNQVKERNEDYKEITQKLSFPMGRN----VF-----SHDYVFWCG 727

  Fly   764 RLNYSVDEQEGYFHMFRSANLRFFNNMAYVIKTQE----------EVAESMTSIVEMFRIALDNA 818
            ..||.:|..              ::.:.|.|:.|:          ::.:|.:.|.:.|.....:.
 Frog   728 DFNYRLDLP--------------YDEVFYYIRRQDWKKLLEYDQLQLQKSASKIFKDFYEGTIHF 778

  Fly   819 GNTEVRYITGG-----------------VLQRRKSKLPTLDVPRGMPRNLSESQLVQLSSKALSN 866
            |.| .:|..|.                 ||..|| |.|.....|.:  ||.:|.| ..|:|....
 Frog   779 GPT-YKYDIGSEAYDTSEKCRTPAWTDRVLWWRK-KWPFEKSARDI--NLLDSDL-DFSTKIKHT 838

  Fly   867 MA-GQFSKLGQTFKKPQAHPSSLAATMNPQVM------RQR-DSEIESGQ--------------- 908
            .. |.....|:. :.|.:....:.|.:..:|.      |:| ..||.|.|               
 Frog   839 WTPGALMYYGRA-ELPYSDHRPVLAMVEVEVQEVDVTSRERVFQEITSSQGPLDATVEVRILFPT 902

  Fly   909 EAEKAVFTLGRKHRNSNSASSTDTDEHDNSLYEPEVDSDVEIAMDKSNYNENAFLPSVGIVMGNQ 973
            ..|||.|                          || |...|:......|. |..|  |.::.|..
 Frog   903 AEEKADF--------------------------PE-DISTELVKTFQTYG-NVIL--VRLIRGQM 937

  Fly   974 ---KEDSPSSSDEIRHLEQKDSMCKTTEDVL----------TISITSVTDH--VGLPTGLLENAP 1023
               .|||                 :|..:||          ||.|...|:.  .||...:..|..
 Frog   938 IVTFEDS-----------------RTALNVLDLDGLKVNGKTIKIRPKTEDWLKGLHEEIARNRD 985

  Fly  1024 AIRPITPNPLICVEAHEAFD----DRE-EGVKPVSSTSARDLSLPGLPTHPEANK---------- 1073
            :|.|::||...|: ..|.||    |.| ||  .:....|.||    :|.|.|.||          
 Frog   986 SIAPMSPNANSCL-LEENFDFTSLDYESEG--DILDDDADDL----MPQHLETNKPGAVCDRPAD 1043

  Fly  1074 --------LKQLTS-------------PLSKLAKNIGLNLDPRKIATKTGVLSPTILSAENSPPE 1117
                    ..|:.|             .|.|..:.:|      :..:::...|.::..|...||:
 Frog  1044 DSVACAVRAPQVNSKKPHSFKDDADLMALKKELEAVG------EFRSRSPSRSLSVPHASRPPPQ 1102

  Fly  1118 RDP 1120
            |.|
 Frog  1103 RPP 1105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7956NP_001036740.2 Syja_N 174..413 CDD:280532 75/240 (31%)
COG5329 <197..586 CDD:227637 125/410 (30%)
hSac2 663..768 CDD:289241 22/130 (17%)
synj2NP_001135511.1 Syja_N 60..342 CDD:280532 75/240 (31%)
INPP5c_Synj2 531..863 CDD:197333 68/364 (19%)
RRM_SF 876..1010 CDD:302621 40/181 (22%)
TonB_N <1206..1280 CDD:292650
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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