DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and HB4

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_182018.1 Gene:HB4 / 819100 AraportID:AT2G44910 Length:318 Species:Arabidopsis thaliana


Alignment Length:357 Identity:75/357 - (21%)
Similarity:108/357 - (30%) Gaps:134/357 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LSESLQSEQTRSSSSENLPFSISRLLSKPFETS-------HHHHNNNN------------HLLSS 102
            ||.||.:.|.:..|        .||...|..||       |.|:.|||            ||..|
plant    10 LSLSLGNSQQKEPS--------LRLNLMPLTTSSSSSSFQHMHNQNNNSHPQKIHNISWTHLFQS 66

  Fly   103 S---PGSSSNNNNSGE--KGEEKELLQQEDHDLAYKLATSIANSTYGSAAALYSYPHLYPSAAGG 162
            |   ..::..|:::|.  :|......|           :|:|.......||:.|.|:...|:..|
plant    67 SGIKRTTAERNSDAGSFLRGFNVNRAQ-----------SSVAVVDLEEEAAVVSSPNSAVSSLSG 120

  Fly   163 HVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGHPYQ----------------- 210
            :                            |..||.|     |.|...:                 
plant   121 N----------------------------KRDLAVA-----RGGDENEAERASCSRGGGSGGSDD 152

  Fly   211 ---NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKW 272
               ......|||.|.|  :.|...||:.|.:...|...::.|||:.|.:...||:.||||||.:.
plant   153 EDGGNGDGSRKKLRLS--KDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRART 215

  Fly   273 RRQ----------------TAEEREAERQAANRLMLSLQAEAISKGFAPPSA---------PLGS 312
            :.:                |.|.|..:::.:....|.|... :.....||:.         ...|
plant   216 KLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPH-LYMHMTPPTTLTMCPSCERVSSS 279

  Fly   313 QGGVNGAPLAAL----------HGLQPWAEAS 334
            ...|..||....          ..|.||...|
plant   280 AATVTAAPSTTTTPTVVGRPSPQRLTPWTAIS 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 34/163 (21%)
Homeodomain 218..274 CDD:459649 21/55 (38%)
HB4NP_182018.1 HD-ZIP_N 8..124 CDD:461370 33/160 (21%)
Homeodomain 162..216 CDD:459649 22/55 (40%)
HALZ 218..261 CDD:128634 5/43 (12%)

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