DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and lbx1b

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001156784.1 Gene:lbx1b / 793810 ZFINID:ZDB-GENE-050309-27 Length:265 Species:Danio rerio


Alignment Length:244 Identity:69/244 - (28%)
Similarity:94/244 - (38%) Gaps:81/244 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 SSSSENLPFSISRLLSKPFETSHHHHNNNNHLLSSSPGSSSNNNNSGEKGEEKELLQQEDHDLAY 132
            ||:....||||:.:||||.....|    ..|.|.:|.                            
Zfish    29 SSNKPLTPFSITDILSKPTVKRFH----RIHRLPASD---------------------------- 61

  Fly   133 KLATSIANSTYGSAAALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAA 197
            ::..||..|                            ::|.:|.|.|......||.:..|.....
Zfish    62 RVRQSITVS----------------------------RQTLITQASPLCALQELASKTFKGLELG 98

  Fly   198 AFPIA------RRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKM 256
            ....|      :..|   |..:|.||:|.||:||..|:.||||||..||||:.|:|..:|..|.:
Zfish    99 VLQAAEGKDGLKLFG---QRDSPKKRRKSRTAFTNHQLYELEKRFLHQKYLSPADRDQIAHQLGL 160

  Fly   257 TDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAISKGFAP 305
            |:|||.|||||||.|.:|. .||.:|:.::..           |.|..|
Zfish   161 TNAQVITWFQNRRAKLKRD-LEEMKADVESVR-----------STGLVP 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 45/116 (39%)
Homeodomain 218..274 CDD:459649 32/55 (58%)
lbx1bNP_001156784.1 Homeodomain 122..178 CDD:459649 32/55 (58%)

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