DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and lbx1b

DIOPT Version :9

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001156784.1 Gene:lbx1b / 793810 ZFINID:ZDB-GENE-050309-27 Length:265 Species:Danio rerio


Alignment Length:244 Identity:69/244 - (28%)
Similarity:94/244 - (38%) Gaps:81/244 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 SSSSENLPFSISRLLSKPFETSHHHHNNNNHLLSSSPGSSSNNNNSGEKGEEKELLQQEDHDLAY 132
            ||:....||||:.:||||.....|    ..|.|.:|.                            
Zfish    29 SSNKPLTPFSITDILSKPTVKRFH----RIHRLPASD---------------------------- 61

  Fly   133 KLATSIANSTYGSAAALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAA 197
            ::..||..|                            ::|.:|.|.|......||.:..|.....
Zfish    62 RVRQSITVS----------------------------RQTLITQASPLCALQELASKTFKGLELG 98

  Fly   198 AFPIA------RRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKM 256
            ....|      :..|   |..:|.||:|.||:||..|:.||||||..||||:.|:|..:|..|.:
Zfish    99 VLQAAEGKDGLKLFG---QRDSPKKRRKSRTAFTNHQLYELEKRFLHQKYLSPADRDQIAHQLGL 160

  Fly   257 TDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAISKGFAP 305
            |:|||.|||||||.|.:|. .||.:|:.::..           |.|..|
Zfish   161 TNAQVITWFQNRRAKLKRD-LEEMKADVESVR-----------STGLVP 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 45/116 (39%)
Homeobox 220..273 CDD:278475 31/52 (60%)
lbx1bNP_001156784.1 Homeobox 124..178 CDD:395001 31/53 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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