DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and Nkx6-1

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:329 Identity:96/329 - (29%)
Similarity:127/329 - (38%) Gaps:96/329 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ESETPLSESL----------QSEQTRSSSSENLPF--------------SISRLLSKPFETSHHH 92
            |.:|||..:.          .|..:.||||.:.|.              .:|.|.|.|.:.|...
  Rat    30 EMKTPLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGAHNPGGLKPPAAGGLSSLGSPPQQLSAAT 94

  Fly    93 HNNNNHLL--------------SSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTY 143
            .:..|.:|              |:||..||::::|............    .|...|.:.|:|..
  Rat    95 PHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSASAAAA----AAAAAAAAAASSPA 155

  Fly   144 GSAAALYSY---------PHLY--PSAAG-GHVLRVP------PQRTPLTW----ALPPLHHAAL 186
            |..|.|..:         |.||  ||||. ..|.|.|      |.|||:.|    ..||...|.|
  Rat   156 GLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARL 220

  Fly   187 A---HQAV----KDRLAAAFPIARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLAS 244
            |   ||..    ||                     .|||..|.:|:..|:..|||.|.:.||||.
  Rat   221 ACTPHQGSILLDKD---------------------GKRKHTRPTFSGQQIFALEKTFEQTKYLAG 264

  Fly   245 AERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE----REAERQAANRLMLSLQAEAISKGFAP 305
            .|||.||..|.||::|||.||||||||||::.|.|    ::.:.....||..:.:.|.....:..
  Rat   265 PERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDDDYNK 329

  Fly   306 PSAP 309
            |..|
  Rat   330 PLDP 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 42/118 (36%)
Homeodomain 218..274 CDD:459649 32/55 (58%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 20/100 (20%)
Repressor domain. /evidence=ECO:0000250 102..269 54/191 (28%)
Homeodomain 236..294 CDD:459649 34/57 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 7/39 (18%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 5/27 (19%)

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