DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and Vax1

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_072158.1 Gene:Vax1 / 64571 RGDID:621132 Length:336 Species:Rattus norvegicus


Alignment Length:128 Identity:47/128 - (36%)
Similarity:64/128 - (50%) Gaps:11/128 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 KKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE- 281
            |:.|||||..|:..||..|.:.:|:...||..|||.|.:::.|||.||||||||.::...::.| 
  Rat   101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSEL 165

  Fly   282 ---AERQAANRLMLSLQAEAISKG--FAPPSAPLGSQGGVNGAPLAALHGLQ-PWAEASHAAG 338
               ....||...:|.|    :.:|  .:||..|........||..:||.|.. |...|..|||
  Rat   166 RSVVSETAATCSVLRL----LEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAG 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 37/102 (36%)
Homeodomain 218..274 CDD:459649 28/55 (51%)
Vax1NP_072158.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..69
vax upstream domain 72..99
homeobox 100..159 28/57 (49%)
Homeodomain 101..157 CDD:459649 28/55 (51%)
vax downstream domain 178..189 3/14 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..267
vax terminal domain 315..323
Blue background indicates that the domain is not in the aligned region.

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