DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment C15 and hoxb3

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:261 Identity:68/261 - (26%)
Similarity:102/261 - (39%) Gaps:49/261 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 FETSHHHHNNNNHLLSSSPGSSSNNNNSGEKGEEKEL--------LQQEDHDLAYKLATSIANST 142
            |.||.|..|.    ...|..|..:..:||...:.|.|        |..|........|...:|:.
 Frog    32 FPTSSHMDNE----FQRSSCSLQSLGHSGPLVKAKNLNGSCMRPNLSSEQSQPLSPTANPSSNTN 92

  Fly   143 YGSAAALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGH 207
            ..|:.|..|.|....|.|.|.    |..:....|...       :.|..|.:.:...|.|...| 
 Frog    93 SSSSQASLSKPSPAKSQASGS----PASKQIFPWMKE-------SRQNSKQKSSPPAPAAESCG- 145

  Fly   208 PYQNRTPP---KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRR 269
              .:|:||   ..|:.||::|..|:.||||.||..:||....|..:|..|.:::.|:|.||||||
 Frog   146 --GDRSPPGSSASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRR 208

  Fly   270 TKWRRQTAEEREAERQAANRLMLSLQAEAISKGFAPPSA--PLGSQGGVNGAPLAALHGLQPWAE 332
            .|:::..                .::..:.|.|.|.|::  ||..|.  :...|.::|.:....|
 Frog   209 MKYKKDQ----------------KVKGMSSSSGGASPTSTPPLSMQS--SAGFLGSMHSMTANYE 255

  Fly   333 A 333
            |
 Frog   256 A 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 38/123 (31%)
Homeodomain 218..274 CDD:459649 25/55 (45%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 25/55 (45%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.