DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and Dlx6

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001414318.1 Gene:Dlx6 / 500023 RGDID:1561539 Length:298 Species:Rattus norvegicus


Alignment Length:254 Identity:64/254 - (25%)
Similarity:100/254 - (39%) Gaps:63/254 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 SHHHHNNNNHLLSSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALYSYP 153
            |||||:.::|  ..||.:|...|:...:                               :|.:||
  Rat    91 SHHHHHQHHH--HGSPYASGGGNSYNHR-------------------------------SLAAYP 122

  Fly   154 HLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGHPYQNRTPPKRK 218
            ::..|           |.:|.   |...|:::.|.|...|............|....|....|.:
  Rat   123 YMSHS-----------QHSPY---LQSYHNSSAAAQTRGDDTDQQKTTVIENGEIRFNGKGKKIR 173

  Fly   219 KPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWR---RQTAEER 280
            ||||.::.:|:..|..||.:.:|||..|||.||..|.:|..|||.||||:|:|::   :|.:...
  Rat   174 KPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPH 238

  Fly   281 EAERQAANRLMLSLQAEAISKGFAPPSAPL----GSQGGVNGAPLAALHGLQPWAEASH 335
            |::         .|...|.....:|...|:    .|..||:..|.:.:.|...|..:.|
  Rat   239 ESD---------PLPGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMPGYSHWYSSPH 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 37/125 (30%)
Homeodomain 218..274 CDD:459649 27/58 (47%)
Dlx6NP_001414318.1 None

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