Protein Alignment C15 and Cdx1

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001406562.1
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 248
• Identity: 71/248 - (28%)
• Similarity: 93/248 - (37%)
• Gaps: 83/248 - (33%)

  Fly   142 TY---GSAAALYSYPHLYPSAAG-GHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAF--- 199
            ||   |.|.|    |..||..|| .||  .|....|.|||.|        ..|.||..|||:
  Rat    29 TYAPPGPAPA----PPQYPDFAGYTHV--EPAPAPPPTWAAP--------FPAPKDDWAAAYGPG 79

  Fly   200 --------------------PI-----------ARRIGHP-------YQNRTPPK---------- 216
                                |:           |:.:|.|       .|.|||.:
  Rat    80 PAVPAASPAPLAFGPPPDFSPVPAPPGPGPGILAQSLGGPGAPSSPGVQRRTPYEWMRRNVAAAG 144

  Fly   217 ---------RKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKW 272
                     :.|.|..:|..|..||||.||..:|:....::.||..|.:|:.|||.||||||.|.
  Rat   145 GGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKE 209

  Fly   273 RRQTAEEREAERQAANRLMLSLQAEAISKGFAPPSA-PLGS----QGGVNGAP 320
            |:...::::.::|...:.|...|......|...||. ||||    ..|:.|.|
  Rat   210 RKVNKKKQQQQQQQQQQPMPPTQLPLPLDGTPTPSGPPLGSLCPTNAGLLGTP 262

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	47/183 (26%)
		Homeodomain	218..274	CDD:459649	25/55 (45%)
Cdx1	NP_001406562.1	Caudal_act	13..140	CDD:461413	32/124 (26%)
		Homeodomain	156..211	CDD:459649	25/54 (46%)