DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and scro

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster


Alignment Length:173 Identity:34/173 - (19%)
Similarity:54/173 - (31%) Gaps:59/173 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1296 HGCHQAG----FIEIYDNYTDSN--------GTLWH-LCEHHATGKPAGVEPEPAKQSGLEYTHY 1347
            |||.|:|    .::::|......        |||.| ||:.....:...::.:..|..|:.    
  Fly   160 HGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVR---- 220

  Fly  1348 PAAH---------------GTAAKLRQPVGPGQHGVGKPAPIYITSYLNTIHIRQRNANGTGIRL 1397
            |..|               ..|.||:.....|:  :...|.||.|...:.|...         |.
  Fly   221 PTVHIYASLIKALCQIGELSFAFKLKDEAYEGK--IKVDAAIYSTLISSLIKAG---------RS 274

  Fly  1398 NATVRLQEDAGYKMKLISNTDEWVESCRPNPCQY----GGKCI 1436
            |....:.|:...|            .|:|:...|    .|.|:
  Fly   275 NEVSMILEEMSEK------------GCKPDTVTYNVLINGFCV 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863
Homeodomain 218..274 CDD:459649
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 14/73 (19%)
Blue background indicates that the domain is not in the aligned region.

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