DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and HOXA13

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_000513.2 Gene:HOXA13 / 3209 HGNCID:5102 Length:388 Species:Homo sapiens


Alignment Length:169 Identity:41/169 - (24%)
Similarity:65/169 - (38%) Gaps:40/169 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 GSAAALYSYPH---------LYPSAAGGHVLRVPPQRTPL----TWALP---------PLHHAAL 186
            |.||..|.:..         :.|...|....|..|...|:    .||||         |...|..
Human   234 GYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQP 298

  Fly   187 AHQAVKDRLAAAFPIARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALA 251
            .| ..|..|...      :.||....:..:.:|.|..:|::|:.|||:.:...|::...:|..::
Human   299 PH-LWKSTLPDV------VSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 356

  Fly   252 RGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRL 290
            ....:::.||..||||||.|           |::..|:|
Human   357 ATTNLSERQVTIWFQNRRVK-----------EKKVINKL 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 23/95 (24%)
Homeodomain 218..274 CDD:459649 18/55 (33%)
HOXA13NP_000513.2 HoxA13_N 85..224 CDD:463521
Homeodomain 323..379 CDD:459649 19/66 (29%)
Blue background indicates that the domain is not in the aligned region.

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