Protein Alignment C15 and Hoxc5

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 211
• Identity: 59/211 - (27%)
• Similarity: 85/211 - (40%)
• Gaps: 66/211 - (31%)

  Fly   131 AYKLATSIANSTYGSA----AALYSY--------------------------PHLYP-------S 158
            ||.:.|.   ..||||    |:.|.|                          |..:|       :
  Rat    18 AYNMQTC---GNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAA 79

  Fly   159 AAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIAR---RIGHP---YQNRTPPK- 216
            ||.||.|. ..:..||.   |.::....|..|:::|..::..|..   :.|.|   .|...||:
  Rat    80 AAPGHALG-RDEAAPLN---PGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQI 140

  Fly   217 --------------RKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 267
                          .|:.|||:||.|..||||.||..:||....|..:|..|.:.:.|:|.||||
  Rat   141 YPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQN 205

  Fly   268 RRTKWRRQT-AEEREA 282
            ||.||::.: .:.:||
  Rat   206 RRMKWKKDSKMKSKEA 221

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	36/109 (33%)
		Homeodomain	218..274	CDD:459649	28/55 (51%)
Hoxc5	NP_001101586.1	Homeodomain	156..212	CDD:459649	28/55 (51%)