DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and hoxd3a

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:319 Identity:79/319 - (24%)
Similarity:121/319 - (37%) Gaps:69/319 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GGSCYDESET----PLSESLQSEQTRSSSSEN---LPFSISRLLSKPFETS---HHHHNNNNHLL 100
            ||..|.:|::    |..:...     |||.||   .|..       |.:|:   ...|.|.:...
Zfish    14 GGYSYPKSDSYTYGPTHQGFS-----SSSIENDYQSPIC-------PIQTTSVRQATHKNGDING 66

  Fly   101 SSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALYSYPHLYPSAAGGHVL 165
            |....|:|..|:..|...|    ||:...||....:...|||....:         ||:.|....
Zfish    67 SCMRPSASQGNSQPESISE----QQQAAPLAASSPSPSTNSTQKKKS---------PSSNGSSTA 118

  Fly   166 RVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGHPYQNRTP--PKRKKPRTSFTRIQ 228
            .....:....|...       ..|..|.: :...|.|   |....:::|  |..|:.||::|..|
Zfish   119 TPVISKQIFPWMKE-------TRQNAKQK-STNCPAA---GETCDDKSPPGPASKRVRTAYTSAQ 172

  Fly   229 VAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT------------AEERE 281
            :.||||.||..:||....|..:|..|.:|:.|:|.||||||.|:::..            :.:|.
Zfish   173 LVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIMHSPLGHSPDRS 237

  Fly   282 AERQAANRLMLSLQAEAI-SKGFAPPSAPLGSQGGVNGAPLAALHGLQPWAEASHAAGC 339
            .....:|.:..|.|...: |..:..||.|..::      |...::||.  |..:...||
Zfish   238 PPLSGSNHIGYSGQLPNVNSLSYDAPSPPSFAK------PQQNIYGLA--AYTAPLGGC 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 39/133 (29%)
Homeodomain 218..274 CDD:459649 26/55 (47%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 37/180 (21%)
COG5576 116..237 CDD:227863 34/131 (26%)
Antp-type hexapeptide 126..131 1/4 (25%)
Homeodomain 162..218 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 2/26 (8%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

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