Protein Alignment C15 and hoxd4a

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001119917.1
• Gene: hoxd4a / 30329
• ZFINID: ZDB-GENE-980526-214
• Length: 256
• Species: Danio rerio
• Alignment Length: 249
• Identity: 65/249 - (26%)
• Similarity: 99/249 - (39%)
• Gaps: 44/249 - (17%)

  Fly    44 MDGGSCYDESETPLSESLQSEQTRSSSSENLPFSISRLLSKPFETSHHHHNNNNHLLSSSPG--S 106
            |:||. .|.|.......||.....||...|     |:.:...|... ..::.|:::...|||  |
Zfish     1 MEGGK-KDNSRKISISYLQKLMAMSSYMVN-----SKYVDPKFPPC-EEYSQNSYIPEQSPGYYS 58

  Fly   107 SSNNNNSGEKGEEKELLQQEDH-DLAYKLATSIANSTY--GSAAALYSYPHLYP----------- 157
            .|.:.:....|    :..:.:: :..|..:|...:|..  |......|.|..:|
Zfish    59 PSQDTDFQHPG----IYSRSNYSEQPYSCSTVQGSSVQPRGHVQDQASTPSPFPAQTEQCPAVQI 119

  Fly   158 --SAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGHPYQNRTPPKRKKP 220
              |..||.     .|.|.....:|....|.:.....|..:....|          :.|.|:.|:.
Zfish   120 SGSRTGGQ-----QQNTKTQNGIPTKQPAVVYPWMKKVHVTTVNP----------DYTGPEPKRS 169

  Fly   221 RTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 274
            ||::||.||.||||.||..:||....|..:|..|.:::.|:|.||||||.||::
Zfish   170 RTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	31/79 (39%)
		Homeodomain	218..274	CDD:459649	28/55 (51%)
hoxd4a	NP_001119917.1	Homeodomain	167..223	CDD:459649	28/55 (51%)