Protein Alignment C15 and Cdx4

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 297
• Identity: 66/297 - (22%)
• Similarity: 104/297 - (35%)
• Gaps: 102/297 - (34%)

  Fly    40 SDVDMDGGS--CYDESETPLSESLQSEQTRSSSSENLPFSISRLLSKPFETSHHHHNNNNHLLSS 102
            |::|..|.|  .:....:|..|...:....||:...:|.                    |.:.||
  Rat    60 SNMDPHGPSLGAWSSPYSPPREDWSTYPGPSSTMGTVPM--------------------NDMTSS 104

  Fly   103 SP-------------GSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALYSYPH 154
            ||             |.:...:|.|..           .|.|.:...||.:.|.|.|.:
  Rat   105 SPAFGSPDYSTLGPTGGAGGASNGGSL-----------PDAASESLVSIDSGTSGGATS------ 152

  Fly   155 LYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGHPYQNRTPPKRKK 219
              ||.:         :.:|..|                        :.:.:....:.||   ::|
  Rat   153 --PSRS---------RHSPYAW------------------------MRKTVQVTGKTRT---KEK 179

  Fly   220 PRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAER 284
            .|..:|..|..||||.||..:|:....::.||..|.:::.|||.||||||.|.|:...::.....
  Rat   180 YRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE 244

  Fly   285 QAANRLMLSLQAE--AISKG------FAPPSAPLGSQ 313
            .:..    |:|::  :||.|      |..|||..|.|
  Rat   245 NSGG----SVQSDSGSISPGELPNAFFTTPSAVRGFQ 277

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	38/126 (30%)
		Homeodomain	218..274	CDD:459649	24/55 (44%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	28/185 (15%)
		Homeodomain	179..234	CDD:459649	24/54 (44%)