DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and Hoxd3

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:266 Identity:61/266 - (22%)
Similarity:91/266 - (34%) Gaps:109/266 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 SIANSTYGSAAALYSYPHL--------------YPSAA-------------------GGHVLR-- 166
            |.|...||     ||.||.              |||:|                   .|..:|  
  Rat    35 SKATDAYG-----YSTPHQPYPPPAAANSLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPG 94

  Fly   167 --------------------VPPQRTPLTWALPPLH-----------------HAALAHQAVKDR 194
                                .|||..|....|||..                 :|:.:...:..:
  Rat    95 TGNSQGGGGGNQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGSGVPAKKTKGGPNASSSSSTISKQ 159

  Fly   195 LAAAFPIARR-------------IGHPYQNRTP--PKRKKPRTSFTRIQVAELEKRFHKQKYLAS 244
            :   ||..:.             .|...::::|  |..|:.||::|..|:.||||.||..:||..
  Rat   160 I---FPWMKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCR 221

  Fly   245 AERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAISKGFAPPSAP 309
            ..|..:|..|.:|:.|:|.||||||.|:::.         |.|..::.|...::..:     |.|
  Rat   222 PRRVEMANLLNLTERQIKIWFQNRRMKYKKD---------QKAKGILHSPAGQSPER-----SPP 272

  Fly   310 LGSQGG 315
            ||...|
  Rat   273 LGGAAG 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 38/133 (29%)
Homeodomain 218..274 CDD:459649 26/55 (47%)
Hoxd3NP_001257967.1 Homeodomain 195..251 CDD:459649 26/55 (47%)
DUF4074 369..430 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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