Protein Alignment C15 and Hoxd1

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 225
• Identity: 68/225 - (30%)
• Similarity: 87/225 - (38%)
• Gaps: 71/225 - (31%)

  Fly   135 ATSIANSTYGSAA-------ALYSYPHLYPSA----AGGHVLRVP-PQRT--PLTWALP------ 179
            |||...|:.||..       |.::.|..:|:.    |.||    | |.:|  |...|.|
  Rat   135 ATSAVFSSGGSFLLSGQVDFAAFAEPGPFPACLKEPADGH----PGPFQTVSPAPGACPKPASPT 195

  Fly   180 ---PLHHAALAHQAVKDRLAAAFPIARRIGHPYQNRTPPKRKK--------P----RTSFTRIQV 229
               |..|:......||                   |..||:.|        |    ||:|:..|:
  Rat   196 SGLPAAHSTFEWMKVK-------------------RNAPKKSKLSEYGATSPSSAIRTNFSTKQL 241

  Fly   230 AELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSL 294
            .||||.||..|||..|.|..:|..|::.|.|||.||||||.|   |...|||.         |..
  Rat   242 TELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMK---QKKREREG---------LLA 294

  Fly   295 QAEAISKGFAPPSAPLGSQGGVN-GAPLAA 323
            .|.:::....|.|.....:.|.| |:|..|
  Rat   295 TAASVASLQLPGSETSPIKSGRNLGSPSQA 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	41/130 (32%)
		Homeodomain	218..274	CDD:459649	30/67 (45%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	48/148 (32%)
		Homeodomain	233..286	CDD:459649	29/55 (53%)