Protein Alignment C15 and Msx2

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_037114.2
• Gene: Msx2 / 25483
• RGDID: 3116
• Length: 267
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 72/280 - (25%)
• Similarity: 107/280 - (38%)
• Gaps: 92/280 - (32%)

  Fly    63 SEQTRSSSSENLPFSISRLLSKPFETSHHHHNNNNHLLSSSPGSSSNNNNSGEKGEEKELLQQED 127
            :|:.|...| :||||:..|:|                               :|...||
  Rat    35 AEERRVKVS-SLPFSVEALMS-------------------------------DKKPPKE------ 61

  Fly   128 HDLAYKLATSIANSTYGSAAALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVK 192
                   :.::......:.|.|  .|.|.|    ||.:|......||   :.|...|::..:..:
  Rat    62 -------SPAVPPDCASAGAVL--RPLLLP----GHGVRDAHSPGPL---VKPFETASVKSENSE 110

  Fly   193 DRLAAAFPIARRIGHPYQNRTPPK--------------RKKPRTSFTRIQVAELEKRFHKQKYLA 243
            |.       |..|..|.:...||:              .:||||.||..|:..||::|.:::||:
  Rat   111 DG-------APWIQEPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLS 168

  Fly   244 SAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLS-----------LQAE 297
            .||||..:..|.:|:.|||.||||||.|.:|....|.|..:.||..::.|           |||.
  Rat   169 IAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPFPINSPLQAA 233

  Fly   298 AISKGFAP------PSAPLG 311
            :|.....|      |..|:|
  Rat   234 SIYSASYPFHRPVLPIPPVG 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	47/147 (32%)
		Homeodomain	218..274	CDD:459649	28/55 (51%)
Msx2	NP_037114.2	Homeodomain	143..199	CDD:459649	28/55 (51%)