DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment C15 and tab-1

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_495392.1 Gene:tab-1 / 185156 WormBaseID:WBGene00006380 Length:197 Species:Caenorhabditis elegans


Alignment Length:213 Identity:57/213 - (26%)
Similarity:89/213 - (41%) Gaps:57/213 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 FSISRLLSKPFETSHHHHNNNNHLL---SSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATS 137
            |||..||       ..|.|....:|   .:||...|:::...||.....:.....::|...:..:
 Worm     8 FSIDDLL-------RGHSNEIQRILKLDQTSPTPQSSSDEGSEKSSISVMSVPLTNELTPTITPA 65

  Fly   138 IANSTYGSAAALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQ-----------AV 191
            :::..:.:|||.                              |:.|:.|..|           |.
 Worm    66 LSDQLWLAAAAF------------------------------PIEHSLLLAQRNGVFPGFWSTAD 100

  Fly   192 KDRLAAAFPIARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKM 256
            :.||:.|....||:      |....|:|.||.|:..|:..||:||..|:||::.||..||..|.:
 Worm   101 QIRLSNATKAYRRL------RLECSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNL 159

  Fly   257 TDAQVKTWFQNRRTKWRR 274
            ::.||||||||||.|.::
 Worm   160 SETQVKTWFQNRRMKHKK 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 33/79 (42%)
Homeodomain 218..274 CDD:459649 28/55 (51%)
tab-1NP_495392.1 Homeodomain 121..177 CDD:459649 28/55 (51%)

Return to query results.
Submit another query.