Protein Alignment C15 and lin-39

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001021164.1
• Gene: lin-39 / 176068
• WormBaseID: WBGene00003024
• Length: 253
• Species: Caenorhabditis elegans
• Alignment Length: 296
• Identity: 68/296 - (22%)
• Similarity: 95/296 - (32%)
• Gaps: 110/296 - (37%)

  Fly    28 VDSDSRMSCGSGSD-------VDMDGGSCYDESETPLSESLQSEQTRSSSSENLP----FSISRL 81
            :.|.|.:|...|.|       :....||.||    |.|.|..:....||.....|    .....|
 Worm    42 IPSSSELSSTIGYDPMTASAALSAHFGSYYD----PTSSSQIASYFASSQGLGGPQYPILGDQSL 102

  Fly    82 LSKPFETSHHHHNNNNHLLSSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSA 146
            ...|..||.||  :..||         ..::..:|.::|:.:..:|.|:           ...|.
 Worm   103 CYNPSVTSTHH--DWKHL---------EGDDDDDKDDDKKGISGDDDDM-----------DKNSG 145

  Fly   147 AALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFPIARRIGHPYQN 211
            .|:|.:.....|..||
 Worm   146 GAVYPWMTRVHSTTGG------------------------------------------------- 161

  Fly   212 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 276
              ....|:.||::||.||.||||.||..|||....|..:|..|.:|:.|||.||||||.|.:::.
 Worm   162 --SRGEKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKEN 224

  Fly   277 AEEREAERQAANRLMLSLQAEAISKGFAPPSAPLGS 312
            .:                      |...||..|.|:
 Worm   225 KD----------------------KPMTPPMMPFGA 238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	35/117 (30%)
		Homeodomain	218..274	CDD:459649	30/55 (55%)
lin-39	NP_001021164.1	Homeodomain	166..222	CDD:459649	30/55 (55%)