DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment C15 and Gsx2

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_573555.1 Gene:Gsx2 / 14843 MGIID:95843 Length:305 Species:Mus musculus


Alignment Length:223 Identity:59/223 - (26%)
Similarity:81/223 - (36%) Gaps:72/223 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 NHLLSSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALYSY-------PH 154
            :||.||.|.:.:....:|..|             |......:|..| |:...|.|.       ..
Mouse    67 SHLHSSRPPAGAGGGATGTAG-------------AAVAGGGVAGGT-GALPLLKSQFSPAPGDAQ 117

  Fly   155 LYPSAAGGHVLRVPPQRTPLTWALPPLHH----------AALAHQAVKDRLAAAFPIARRIGHPY 209
            ..|..:..|....|||.          ||          ||.|..|.    |||...|..:|||.
Mouse   118 FCPRVSHAHHHHHPPQH----------HHHHHQPQQPGSAAAAAAAA----AAAAAAAAALGHPQ 168

  Fly   210 Q----------NRTPPKR-----------------KKPRTSFTRIQVAELEKRFHKQKYLASAER 247
            .          |.:.|:|                 |:.||:||..|:.|||:.|....||:...|
Mouse   169 HHAPVCAATTYNMSDPRRFHCLSMGGSDTSQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRR 233

  Fly   248 AALARGLKMTDAQVKTWFQNRRTKWRRQ 275
            ..:|..|.:::.|||.||||||.|.:::
Mouse   234 IEIATYLNLSEKQVKIWFQNRRVKHKKE 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 35/107 (33%)
Homeodomain 218..274 CDD:459649 25/55 (45%)
Gsx2NP_573555.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..151 9/45 (20%)
Homeodomain 204..260 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..305 0/3 (0%)

Return to query results.
Submit another query.