DRSC/TRiP Functional Genomics Resources

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Protein Alignment C15 and Gsx1

DIOPT Version :10

Sequence 1:NP_476873.2 Gene:C15 / 42544 FlyBaseID:FBgn0004863 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_032204.1 Gene:Gsx1 / 14842 MGIID:95842 Length:261 Species:Mus musculus


Alignment Length:184 Identity:51/184 - (27%)
Similarity:68/184 - (36%) Gaps:54/184 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 GSAAALYSY----PH----LYPSAAGGHVLRV--------------------PPQRTPLTWALPP 180
            ||...|:.|    ||    |.|.|.  |..:.                    ||....|..:.||
Mouse    23 GSPPPLFPYAVPPPHALHGLSPGAC--HARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPP 85

  Fly   181 LH----HAALAHQ-AVKDRLAAAFPIARRIGHPYQNRTP-------------------PKRKKPR 221
            ..    ||.|..| :|...:|.....|......||...|                   |..|:.|
Mouse    86 FGSQYCHAPLGRQHSVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMR 150

  Fly   222 TSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQ 275
            |:||..|:.|||:.|....||:...|..:|..|.:::.|||.||||||.|.:::
Mouse   151 TAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C15NP_476873.2 COG5576 <196..315 CDD:227863 31/99 (31%)
Homeodomain 218..274 CDD:459649 25/55 (45%)
Gsx1NP_032204.1 SNAG domain. /evidence=ECO:0000250 1..20
Homeodomain 147..203 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..261 0/4 (0%)
Blue background indicates that the domain is not in the aligned region.

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